G189624


Basic Information

Item Value
gene id G189624
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13979916 ~ 14008260 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257069
CGGACCAACACATGAGAGTTTTCCACATACGGAAGAAAATGACGTAGAGCCAGGCATACTGCCCTGAGCTCCAGAACATTTACATGAGCCAAGCGTAAGCTCGGACTCCACTGTCCATTTACCGACCTCCCTTCGTGGGTGGCACCCCATCCCCATAGAGACGCATCGGTAGTGATTACTTTTCTGGCACTGATCGTGCCTAACGGTGCGCCCTGTGACAGGAAGCGCGGATGCTTCCACAGTCGCAGTGTCCGCGCACCCTGAGCTGACACAATAATTTTCCTGCGTGCGTACATTCGCGGGTCCAGACCGAGTTTCGCCACCCAGCGCTGAAACCCCCTCATATGTAGCCTCCCTAGGGGAATAGCAGCCAATGCTGACGCCATCAGACCCAAAAGTgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgtga

Function

GO: NA

KEGG:

id description
ko00965 Betalain biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU257069 True 506 lncRNA 0.44 2 13979916 14008260

Neighbor

gene id symbol gene type direction distance location
LOC103026383 NA coding downstream 407305 13557022 ~ 13572611 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding downstream 446294 13493576 ~ 13533622 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding downstream 514511 13459735 ~ 13465405 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding downstream 584021 13384925 ~ 13395895 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 697443 13148196 ~ 13282473 (-)
LOC111195442 NA coding upstream 243204 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 540886 14549146 ~ 14609624 (-)
tamm41 tamm41 coding upstream 602691 14610951 ~ 14621412 (-)
prph prph coding upstream 616562 14624822 ~ 14638350 (-)
LOC111195382 tuba1c,LOC108431527,LOC105935211,LOC102211704 coding upstream 639546 14647806 ~ 14654334 (-)
G189600 NA non-coding downstream 36517 13941186 ~ 13943399 (-)
G189522 NA non-coding downstream 433017 13546530 ~ 13546899 (-)
G189509 sarnp non-coding downstream 494358 13472625 ~ 13485558 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding downstream 523489 13452154 ~ 13456427 (-)
G189490 NA non-coding downstream 531391 13448241 ~ 13448525 (-)
G189638 NA non-coding upstream 36485 14044745 ~ 14108618 (-)
G189649 NA non-coding upstream 104924 14113184 ~ 14113481 (-)
G189652 NA non-coding upstream 105944 14114204 ~ 14171621 (-)
G189768 NA non-coding upstream 262176 14270436 ~ 14270800 (-)
G189770 NA non-coding upstream 262778 14271038 ~ 14271403 (-)
tsen2 NA other downstream 903174 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 1265884 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 1360350 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 1584384 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1801306 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1310383 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 1400947 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2337441 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 2561363 16569623 ~ 16599317 (-)
cass4 NA other upstream 2825590 16833850 ~ 16869461 (-)

Expression


Co-expression Network