G189652


Basic Information

Item Value
gene id G189652
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14114204 ~ 14171621 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257105
ttttataatctataatactttatttatttttcagataacATATGGCAATCATGCTTTTTATATAACACCATCTAAagacatttattatatattttttttacatagaataTTTTACATTAGGCCCATGAAACAGTTagaaatatacaaaacaatatTCTCTGACTAGACATATTATCTATAATTTATTATACTCTTTCATTTCTGTTATTGatattcttttctctttttttttacatttcgtAAAGATTATGTGCTTTAGTTTCTGAGATCgacgttttattattattgcagaaAACAGCAAATAATATAAGAGTCTTCAACATTTAGACAAAAACCTCAATGGTCGTACGGACATTCACAGATACTtttacacagtacagttttacAACATTGTTTCAGAGAGAAATCTGCTGAATGGTAACTTTATACAAAACCCACGGAACGCTTATTGATTGCACATTTGAGTTTCTTGAGATCTTTGCAGAGAAGAAAAGGACTCGTTTATCCACATCCCTGTCACACTTAGCTGCCAAAGAAGCAAACTAGCATTTGTCCTTCAGTTCTTCTGGTAAAACGACTGCTGGAACTGTAGCTTGTGGTCTTAAAGCTTAGAGCTTTAACTGGTAGAACTGAAACCACAGGGAATGCACCAGTCAAGTTTCTGCTGTAGATGTATATGTGCGCAAACTCGTAAAGATAATAGGGCTTTAGATGGTTCCTTGAGGAATACCAGAGTAAATCCAGTCTAGGCTCATAAAGAAGCATGTTAGACACTGTGTTGTACTGGGGGTATGACGACTAAATTCAAGCCATGTAGTAATTTTAACGTAACTAGTTTGCTAATCCATTGGCTAGCTTTGTGGCTGTCAGTCATGTGACTGTACTTTGCCGGATTAATTAGACTAATCAAAGGATTGATACTTtgcaaaacagaataaaaaaattacataccaCAGTAGCTGCTTCACATTTCCATTACAAACATGATTCTCTATGGAATCCCTCAAGGAAATATTAAAGGCCCCTTTATGTATAAGAGTGTATAAGCTATTTACTTATTGCTAAGTCCATCTcctaaaagaagaagagaaataaaCATAGACTGGGTCAGTTTAGGTCGAGAAGAACAGATCTTGATTCTCTCAATTTGTTCATGAGGCTGGTTTCTCTTGGGAGTCCTTCTACGTACTATGGCTTCTGCTCAGATCGTCATATCTGATTACGCAACAAAGATGGCGGATGCCTGTCCCTTTAAATCAGTTCAACTGAACTCAgcttagctcagctcagctcaactcaacccaactcaactcaactcaactcaactggAGAGAGACCAAAGTTTAGAACCTCGGTCAAACTTGGTCACGTCCACCATAGTTCCTGAGGATGCAGTGGCATGCAGAACGAGCAAAAAACGAGCAGATTAACAGTGTGGTCGTTGGCGTTGCAACACGTGGCTCTGTGGCTATTTTACCCCCCTTTGCTGTGCTTTATTAACAGGACACAGTGCGACGTTTCGTACGCGAATCTGGCGGAGTGAATACTGGTTTTGGTCCTTCTCACTCTTACATAGAAAAAACGTCCTAAAAACGactctaaaattagaaaattaaaaaaaggaaaaaagaaactaaGCTGTAacagtctctctttctgtgtctcatCGCTGCTCTTGACGTTTGTAAACTCATATTTGTATACTGGTTATACTGGTGTTGTGCTTTTAGATCAGGGTTGATGGGGGTAGAGGGGTTGGTTGTAAACTCttatttctcttatttcttATGACCTCAGAGTGATAATCTGAAAATCTGGCTACATAACCGTAGTTAAAATGCAGGCCACAAACTGATCTGGGCATGCACTGTGTGTACAGTCGCATGCTCACTTAGTGGCTGTAGATTTAAGATTAATAATGTGCCAGCTGTGCCAACTGTGCCAACTTACTTCATTCTGAAAGTttgttgtgtttctttttttttgtatttcttgaaatacaatcaaatacagTTGGATTCTATTCTAAAGTCTTTATACAATATCttaacatattaattacatgtaaatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257105 True 2114 lncRNA 0.36 3 14114204 14171621

Neighbor

gene id symbol gene type direction distance location
LOC103026383 NA coding downstream 541593 13557022 ~ 13572611 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding downstream 580582 13493576 ~ 13533622 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding downstream 648799 13459735 ~ 13465405 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding downstream 718309 13384925 ~ 13395895 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 831731 13148196 ~ 13282473 (-)
LOC111195442 NA coding upstream 79843 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 377525 14549146 ~ 14609624 (-)
tamm41 tamm41 coding upstream 439330 14610951 ~ 14621412 (-)
prph prph coding upstream 453201 14624822 ~ 14638350 (-)
LOC111195382 tuba1c,LOC108431527,LOC105935211,LOC102211704 coding upstream 476185 14647806 ~ 14654334 (-)
G189649 NA non-coding downstream 723 14113184 ~ 14113481 (-)
G189638 NA non-coding downstream 5586 14044745 ~ 14108618 (-)
G189623 NA non-coding downstream 66507 13973655 ~ 14047697 (-)
G189624 NA non-coding downstream 105944 13979916 ~ 14008260 (-)
G189600 NA non-coding downstream 170805 13941186 ~ 13943399 (-)
G189768 NA non-coding upstream 98815 14270436 ~ 14270800 (-)
G189770 NA non-coding upstream 99417 14271038 ~ 14271403 (-)
G189773 NA non-coding upstream 135313 14306934 ~ 14307296 (-)
G189774 NA non-coding upstream 136366 14307987 ~ 14308206 (-)
G189778 NA non-coding upstream 138684 14310305 ~ 14311042 (-)
tsen2 NA other downstream 1037462 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 1400172 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 1494638 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 1718672 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1935594 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1147022 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 1237586 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2174080 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 2398002 16569623 ~ 16599317 (-)
cass4 NA other upstream 2662229 16833850 ~ 16869461 (-)

Expression


Co-expression Network