RNA id: TU257069


Basic Information

Item Value
RNA id TU257069
length 506
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G189624
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13979916 ~ 14008260 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGACCAACACATGAGAGTTTTCCACATACGGAAGAAAATGACGTAGAGCCAGGCATACTGCCCTGAGCTCCAGAACATTTACATGAGCCAAGCGTAAGCTCGGACTCCACTGTCCATTTACCGACCTCCCTTCGTGGGTGGCACCCCATCCCCATAGAGACGCATCGGTAGTGATTACTTTTCTGGCACTGATCGTGCCTAACGGTGCGCCCTGTGACAGGAAGCGCGGATGCTTCCACAGTCGCAGTGTCCGCGCACCCTGAGCTGACACAATAATTTTCCTGCGTGCGTACATTCGCGGGTCCAGACCGAGTTTCGCCACCCAGCGCTGAAACCCCCTCATATGTAGCCTCCCTAGGGGAATAGCAGCCAATGCTGACGCCATCAGACCCAAAAGTgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgtga

Function

GO: NA

KEGG:

id description
ko00965 Betalain biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257034 lncRNA downstream 36517 13941186 ~ 13943399 (-) True G189600
TU256927 lncRNA downstream 433017 13546530 ~ 13546899 (-) True G189522
TU256895 lncRNA downstream 494358 13472625 ~ 13485558 (-) True G189509
TU256867 lncRNA downstream 523489 13452154 ~ 13456427 (-) True G189494
TU257062 lncRNA upstream 32971 14041231 ~ 14047697 (-) False G189623
TU257065 lncRNA upstream 32971 14041231 ~ 14044726 (-) True G189623
TU257066 lncRNA upstream 32971 14041231 ~ 14044726 (-) False G189623
TU257067 lncRNA upstream 32971 14041231 ~ 14044726 (-) False G189623
TU257086 lncRNA upstream 36485 14044745 ~ 14108618 (-) False G189638
XM_007239754.3 mRNA downstream 407305 13557022 ~ 13572611 (-) True LOC103026383
XM_007239755.3 mRNA downstream 446294 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA downstream 446295 13493576 ~ 13533621 (-) False gdf11
XM_022682831.1 mRNA downstream 514511 13459735 ~ 13465405 (-) True LOC111195441
XM_007229643.3 mRNA downstream 584021 13384925 ~ 13395895 (-) True LOC103033524
XM_022682832.1 mRNA upstream 243204 14251464 ~ 14255472 (-) True LOC111195442
XM_015605609.2 mRNA upstream 540886 14549146 ~ 14609624 (-) True vgll4
XM_007248302.3 mRNA upstream 540886 14549146 ~ 14587297 (-) False vgll4
XM_007248303.3 mRNA upstream 602691 14610951 ~ 14621412 (-) True tamm41
XM_007248305.3 mRNA upstream 616562 14624822 ~ 14638350 (-) False prph
XR_002651608.1 other downstream 903400 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 1360350 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 1634534 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1935623 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2988522 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 1310384 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 1423407 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 2394531 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2825590 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3180405 17188665 ~ 17193747 (-) False irf6

Expression Profile