RNA id: XM_022682831.1


Basic Information

Item Value
RNA id XM_022682831.1
length 5022
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC111195441
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13459735 ~ 13465405 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtcaaaacactaaaataaccaAACATCTTCATCCACATTCAAAACAACAATCAACTAGTCTCCATCCGGACCTGCAGGGGGCAGATAAGCTTTGAAACAACCACACCACTGCACTCTGATGGACTTCCTGTCAGGTCTGAGGGATTTCCTGTAAGGCGGCCATCTTTACCCTCAGATCAACACATGCTGCAGGGGACAAAGAAGCAAATGTTTGTTTGGAGCAAAAGCTTGGAAAAagacaaactaaagaaaacaagaaaatcctTCAGTTCACCGGTCAAACGCTACTGgtTATCAACCTAACTATCTGCCTGGCTGATACCTTTCATCAATAAAATCAAACCAATCAAAGACGCCTTCGAGTTGTTCCTTGCGTGACTGGGCTCTTTCAAGTTGGAGCATAACTGAGGGAAAATCAAAGCAAAACACCAGAAACTTGACAGTTGATAACCACCGTGGCAACAGAGACGGAGGATCAACGGCCTCCAGTCAACTTTGTCTACGCAAAGGGCAACTTCAAGTATGGCGGAAGAAGCCACTGGAAAAACCATCAAACAGCTGAAGATGGAGAGGACTTCAGCAAAGATGGCCTTCACAAAACAGGCCAATTACCTCACAAGAGGAATTGAACACCTGACGAAATCAGAGATACAGAAGGAATACAGGGAACTCTGCTCACTCTCCAGGAAAGTCAACGACGCGAACGACGAGTATGAGCTTGGTCTACTAGCGGAGgttgaagaagaggaagaggaggtgaAGCTGAATCCCAAAGAACAAGCAGACCTTTCAAAGACCACAGGAGactgtaaaaatagactggAAGAAGTCAGAACAAGTGTGCAATCCAGTCTCTGGTCAAGGTACGCTGAGGGGGAGTTGACCTTCGCCATTGAGGAGGCAGAGTCGGCCTGCGAACAAGCTCGTGGAACCCCTGTGGCCCTAGTCAACAAAAATGGATATGAGCACCAGGTGGAAAGTGCAAAGCAACTTGTCGCAGATGCAATGGCTGTATTCAAGCAGTGGCAAGAGTGGATACCCAACAAAGAAAAAGATGACTGGGATGGCAGGACAAAGGGTTTAAGAAAGATGAAAAATAACCTTGAGGCAAAAAAGGCTGAATACCTGATCTTGCAGAGAACTGCAGAGGAGGAAAGGCGTGGAACAACTCTTCAGACTCAGTCAGCACAGCAGCCAGTCCAGCAGTCTATCCTGAAAATAAAACCCACCAGCCTACCCAGATTCCATGGCTCAAAAAGAGAGTTCTATCAATGGAAAAAGGACTGGGAGAGTCTGCAGCGGCAAGGTGAACCAACCGGCTCGGCGGAGGCAAAGAAGATGCAGCTCCTTGACAGTGTTGACGACAAAATCCGCAGAGACCTACGGCTCCCCACCTACAAAACTGCTGAGGATATGTTCAAGGTCCTGGAAAACCGATTCGGGAATAAAACCACCATCGCCCTGGAGATCATCGAAGACCTGGAGAGAATCCCACCTCTGAAATCCTACCAGCCCAGGAAGATGATCGAACTGATCCAGTCTGTTGAAAAGGCCTTGAACGACCTCACAGAGCTCGGAAACACCGGAGCCATTAAAAATCCTCTTGTAGTCAAAACGATTGAGAGCAAACTGCCTAACACGATGAAGAGGGACTGGCTAGTCTTCATGGTGAACCCAACAAATGCAGTCACTCCAGAAAACCATTTCGACAGCCTCCTGACCTACCTGAAAACTCAGGAGGAAGTTTTagagaggcttgagcagctcgGACTAGGTGAGAAGCCAGACAAGAGGCTGTCTGACACCAAGAGATATGCCTTGACTAGGTCCACAAGCAAAGGGGGATGCGTCGTCTGTGGTGATGAGCGGCACACAGAAAAGCTCTTCTTCTGCAGGAAGTTTAAAGAACTGAAGCTGAGAGACAAACTGAGTGCTGTGGAGAGACTGGGAGCCTGCACAAAATGTCTGGAGTGTCATGAAGAAGACGATACAACCTGCAAAGACACTTACCTGTGTAGAAAGCCGGGCTGTAGGAGAGGCCATCACTTCTTCCTGTGCCAGAAAGGAGACCCTAAAAGGGTAGAGACGGAGACATCAAAGCCAAACACGAGGAGGCATCAACTGACAGAAGAGCAACAACAATTCGTGTCAGAACTGTCCCCTGAAATGGCAGAAAAGTTCAAGAAAGCCTTTACAAATGTCTCTGCAAGATCTCACTACACCAACGAACCTGCAGGCATGAAAGTAAGTGTAGTTCAAGAACTCCCAGTGATCCTCATGCTCCTTGAAGTCACCACCAATGCAGGTCAGAAGATCGGTACTCTAATCGACTTGGCATCCGACACAAATTACATTACCCACCGTGCAGCCAGGAGACTCGATCTGAAGAGTGAAAAAATCACATTAGTCATCCAAGGGGTTGGAGGAATGGCCCTAAAAGTAAAGACAAGGAGATACCACCTCAGAGTGAGAGTGAAGACCCCCAGAGGAAGCGAACGAGCCCATGAGCTCCTCTGCTATGGCTTGAAAGACATAGCCAAGGTACAAAACCCAGTCACACCCCAACAACTGGAAAGGTTCTTTCCAAATGCCAGCTTGGATGACCTTCACAGACCGGAGCAAATAGAACTGCTCATCAGCCATCGAGAGGGACGACTTGCACCACAGAGGGTGAAGGTGGTCGGTGACCTCGTGCTCTGGGATGGCCCACTAGGAAAGACAGTCGGCGGAACCCACCCAGACCTCTTTGAAAAGGTGGACTTGGCAGCGCACACATCAAAAACCCACTTCGCACGATCCATGAGGGCCACAGCTGTAAAGTACCAAGAACTCTGTGACACGCATGGAATCAAAGCTGAAACCAGAACCACTGTAACCAACAAAGAATTCCTCAACTGGTGGAAATGGGACAGTATTGGAGCAGCCTGTGAACCGAAGTGTGGAGGATGCAGATGCGGCAACTGCCAACCAGGAGGCAAGGAAATGACACTGAGTGAAGAAAAAGAGCTCGAAATCATCAGGACAGGCCTCACCTACATCACCGCTGACAATCACAGCAGTGAACCACACTGGGACACAAAGTACCCATGGATTGAAGATCCAAATTCCCTGCCCAACAACAGAAGTGGAGTGGAAGCCACTTTTCGGAGGATAGAGGAACAACTCAAAAAGGAACCAGAGTGGAAAGTAGTATATGCAGCTCAAGTCCACGAAATGGTGGAGAGAGGAGCAGCAAGGAAACTCACCAAAGAGACTATGGCCAACTGGACAGGACCAGTATGGTACGTCAGCCACTTGGTGGCGCCAAACCCACACTCTGTCACAACACCCATACGCCTGGTCTGGAACAGCAGCCAGAAGTTCAAGGGACTCAGCATGAACGATCTTCTGCTAAAAGGACCTGACGTCCTCAATCCGGTTCGAGCAGTGCTACTCAGGTTCAGAAGAGGTGTGCATGCAGCACTCGGTGACATCAAGAAGATGTATAATTCAGTGTGGTTGGAAGACTTGGAAATGCatcttcacagatttctctgGAGAGACACCGAAGACAGTGAACTGGAAGAGTATGCCATCACCCGAGTCAACATTGGTGACCGACCAGCAGGGTGCATCGCACAGCTGGCCATGAGAGAGACTGCAAAGTTACCCATGTTTGCTCACCTGGAGGAGGAGCGCAGGATCCTGGAGGAAGACTTTTATGTTGATGATGTACTGACTTCTCACAATGACTTGGAAAAGCTGGACAAAATCACCAGAGGAGTTGATGAAATCCTGAAAGCAGGTGGATTCCACCTGAAACCCTGGGTCCGGTCAGGTCAGAGTGGGAGGGACACACTCAGACCAGCAAACAAAATCCTTATTCTCCCAAATCAAAGAAGAGGAGAAGATGACAAAGCCCTGGGAAATGGACCAGACTTCCTGAAGCTACCTGTGGAAGAGTGGCCGAAAAAGTCTGCCAAAGAAGTTGCAGCCCACGCCAGGGAAGGGATAAAGAAGCTTCAAAGGAAGTCCTTCTCAGCAGCACTGACCAGAGCACAGCTCAAGAAAACACACGATGTTCCGTCTGGTGGTACAAGCAGCCCAGTGAAAGTCACAGGCAGAAGAGACACCGTTGCTCAGCAAGGCACTGCAGATGGAAAAGAATCCAAAACTCCACTCCGAAGACCACCAGCTGGTTCTGCAGTGAAAGAACTGATCAATGTCAGAAAATTCAGCAGCCTAACCAAGGTCATCAGAGTTGTTGCCTGGGTGTGGAGAGCTGCAGTTAGATGGAAAAAATTGCTGGACAAAACCCAATTCACAAGTAAGCCAAAGTGGGAGGGGCTTTCGCCAGAAGAGCTTAAGTCCAGAGCCAAACAAGCTGTACTCACCGTCAGTGAATGTGAAGATGCACAGAGAGACCTCTTCCTCGCAGCACAAGAGGGTGCATCCTTCCAAGACACTACCCTCAACCGACTGGCTGTGTACAAAGATGCAGAAACTGGACTCTTGGTCTGCGGAGGAAGATTTCAGATCTTCAATGATGAAAAAACTACGGTACCAATCTTACCTTGTGATGCATGGATATCCTCTCTTCTGGCACAAGAAGCTCACAATGCAAACCACGAAGAAATAGCAGGTACACTTCTGCGAATGAGAAAGAAAGCATGGGTCATAAGAGGCCGGAAACTGGTTCAGATGACTGTGGACAGCTGTGTGACATGCAGAAAGGCTAGAGCTAAAAAGTGCAGACAAATCATGAGTGACCTCCCATCCGAACGGATAACACCAGCCAGACCTTTCGAGTTCACAACAGTGGATCTATTTGGACCTTATGAAGTGAAGGATGAAGTTAAGAAGAAATCAAGGCTCAAGgTGCCAGACCTGCCCTCAATCAGCTGTACACCTTTCTGGACCAGCTACAATCGTCAGAGGTTGAAAATGAAGCCTCCAAGCATGGGACAGAATGGAGCTGGAAACTTCACCCCGCTGATTCCCCTCACAGAAATGGAGCTGCGGAGGCTGCTGTGCGAACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256867 lncRNA downstream 3308 13452154 ~ 13456427 (-) True G189494
TU256868 lncRNA downstream 3308 13454693 ~ 13456427 (-) False G189494
TU256863 lncRNA downstream 11210 13448241 ~ 13448525 (-) True G189490
TU256814 lncRNA downstream 124825 13333460 ~ 13334910 (-) True G189455
TU256805 lncRNA downstream 143790 13315709 ~ 13315945 (-) True G189448
TU256895 lncRNA upstream 7220 13472625 ~ 13485558 (-) True G189509
TU256927 lncRNA upstream 81125 13546530 ~ 13546899 (-) True G189522
TU257034 lncRNA upstream 475781 13941186 ~ 13943399 (-) True G189600
TU257063 lncRNA upstream 508250 13973655 ~ 14044726 (-) False G189623
TU257069 lncRNA upstream 514511 13979916 ~ 14008260 (-) True G189624
XM_007229643.3 mRNA downstream 63840 13384925 ~ 13395895 (-) True LOC103033524
XM_007229637.3 mRNA downstream 177262 13148196 ~ 13282473 (-) True LOC103031721
XM_007229634.3 mRNA downstream 327639 13085029 ~ 13132096 (-) True pparg
XM_007239755.3 mRNA upstream 28171 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA upstream 28171 13493576 ~ 13533621 (-) False gdf11
XM_007239754.3 mRNA upstream 91617 13557022 ~ 13572611 (-) True LOC103026383
XM_022682832.1 mRNA upstream 786059 14251464 ~ 14255472 (-) True LOC111195442
XM_015605609.2 mRNA upstream 1083741 14549146 ~ 14609624 (-) True vgll4
XR_002651608.1 other downstream 383219 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 840169 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 1114353 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1415442 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2468341 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 1853239 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 1966262 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 2937386 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3368445 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3723260 17188665 ~ 17193747 (-) False irf6

Expression Profile