RNA id: XM_007229637.3


Basic Information

Item Value
RNA id XM_007229637.3
length 3371
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC103031721
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13148196 ~ 13282473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggagagtggtagagagagagagagcaaggaggCTGAGGCAGAGTATGAGCATCTCTGCTTGGCTTTCAAGCTGTCAGAGcaccgagagagagaggacagaaacagagagagagagagagagagagagagagagagagagaggaggggagaTCGAGCAGCAGCATCAACAGCATCACGCCCAAAGCACAGGTTTTGACAGGCAGGACTCCGCTTGCTGCCTCGCTTCAAATTAAACACAGATTTGCTTCCTGTGCAACCTTGAGCAATTTCTGCAAGGTTTAACCTTCACCAACCGCAGCCATGAACTTCCTCCGCCGCCGCCTCTCCGACAGCAGCTTCATCGCCAACCTTCCCAACGGCTACATGACGGATCTCCAGAGGCCTgatccacctccacctcctcctcccagTGCTGCCTCCTCCCAGGTCCCTGCCTCTGGTCCAGCTACAGCAGCCCCAGGCACTGCCACAGCTGTCCCCACTGCCCCCACTGCCTCTGCTGCCACCGCTGCCTCCGCTTCCACCAAGTCCCCCAGCGCCTCTCCGGCTCCTGATCGCCGACCCCAGCCTGCCCAGTCCACCAGCTCGGGCTTCTTCAGCTCCATCACCAATGTGGTCAAGCAGACGGCCGCATCCGCTGGACTGGTGGAGCAGAGTCCTGCACAGATGTCCAAGAAGTTCAAGATTCTCCTGGTCATCGATGAGCCACAGCATGAATGGGCCAAGGTGTTTCGCGGGAAGAAGGTCCAGGGAGATTTTGATATCCGTGTTGAGCAGGCGGAATTCTCTGAAATCAACCTCGTGGCTCACGCCAACGGATCCTGCAGTGTGGATATGCAGGTGATCAGGAATGGGACTAAAGTTGTACGGTCCTTCAAGCCTGACTTCGTGTTGGTCCGACAGCACGCGTACAGCATGACCCAGAACGAGGACTTCCGCAACATGATCATCGGACTGCAATATGCTGGAATTCCCAGTGTGAACTCACTGGAGTCTATCTACAACCTCTGTGATAAGCCATGGGCGTTTGCTCAACTGATAAGCACCTATAAGAAACTGGGACCTGAGAAATTCCCTCTTATCGAGCAAACGTTCTACCCAAACTACAGGGACATGATTTCTATGCCTACATTCCCGGTGGTGGTGAAGATTGGACACGCTCATTCTGGCATGGGAAAGGTTAAAATTGACAATCACAACGACTTCCAAGACATTGCCAGTGTGGTTGCCATCACTCAGACTTACACCACTACAGAACCTTTTATCGACGCCAAGTACGACATCAGGGTGCAGAAGATCGGTAGCGACTACAAAGCATATATGAGAACATCAATTTCTGGCAACTGGAAGTCGAACACCGGTTCTGCAATGCTGGAGCAAGTAGCCATGACTGAAAAGTATAAGCTGTGGGTGGACGTCTGCTCAGAGATCTTCGGAGGGCTGGAAATCTGTGCAGTTAAAGCCATACATGGGAAGGATGGGAAAGATTACATCACTGAGGTGGTGGGTTCCTCCATGCAGCTGATAGGAGAGCACCAGGCAGAGGACAGGCAGCTGATAGCTGAAGTGGTCCTGGCCAAGATGAACCAAACGGCAGCTCGGGCACCAGCTCGCCCTTCACAAAGACCCACAACTGCTGTCCAGCAGCCTCAGAGCTCTGCCTTAAAGGAAGGCCCACCTGACCACAGCAGGACTCCGCCCCAGCGTGTCCCTCCTCAAGGGGCCTCAGTGAAACCCCAAGAGTCCCATCCTAAGAGTCAAGAACCTCCACCTGAGCCAGCCCCTAGTGCTCCTGCCCCGGAACCCGTGCCAAAGGCAGCTCCCACCCCAACTCCACCTCCCACAACACAGCAGCCCAAGCCCCAAGGTCAGGCAGCACCCGTGCCAGCTCCAGGAAAGCCAACAGAACTGCCCCCGAAACCACAGCCTCCAAAGCCACTTCCCCCAAAGCCTGTGCCTCCAGTCCGGCGAAACTCCAAGCCTCAGATCCAACCAAAGCCCCAGACCCCACCTCCTGCCAAGGCCCATCCTAAGGCCCAGCCTGAAGGCGCAGGTCAGAGTCCTTCCCAGACAGATTCAGCCCCCACGCAGGTACAGTCCCCAGCCAAAACCCCCGCCAAGCCCCAGTCTCCTAACAAACCCCAGTCCCCAGCCAAACCCCAGGTCCAGCCCAAGCCTGTGCCTAAAGAGCAACCCCAGGTTGAAGCTCCACCTCAAAGAGCAGCTTCAACCGACACGGCACCGTCGGCTTCTGCGCCGTCACCTGCCCCTGCGCCATCACCTGCCCCTGGACCTGCCACAGCTCCGGCCCAGGCTCCTGTCGAGGAACAGCCAGCACCTCAGCAGAAGTCTTCACATCCATTCCTAAACAAATCCCAGTCTCTGACCAATGCCTTCAATGCCTTCGGGGAGACCTTCCGCTCCAGCAATGAGGACGAAGCCAAGGCAGAGACTATCCGAAACTTGAGGAAGTCTTTCGCCAGCCTCTTCTCTGACTAGTGGCTGTTCCAACTTACGGTTCCAAGCTTGGCCGCGGACTTGATCGACGGAAGTGTGTCCTGGTCTGAGGTTAACTCCATGTAGCTGTATACATTGTACCCTCCTCCCAACTCTGCTGTAAATGTCTGAATGTCGATTCGCAAGTGGAGAGTGCCGTATGGTGATTGTCCCCGGCAAAGGTGTTGGTGTTTACATGTTTGATTTGCACTGGTCTGAAACATTGCCATCTGTACATGGAGGACAAGGAGGCGTGTCAGTGATGCATGGTTCTGAGGGGATTTCTGGATTCGGATTTTGGAGGGGGTCGAAAGCGAGCGATCCTGATGGTTGCCGAGTGCTGAGTTGTTCATTAACCCCTTGATGTTGTAGCCTTATCGTGGACGTGTGTTTAATTTACCCAAAGAGAAATATCTGTGAGTAGTCTCCCTCGTCTCTCCAGCGCAGTGTGTATATCTAGACGATCTGTTGTTATTAGCCGACGAGACATTAGTTAAACTTTACCTCGATCAGACCAAGCACTTTCCTTTCCGAGATTCCTACAGTATGCAGTGCTTGGACTGGTCCGTTTCAATGCAGTAGTGGCGTTTCAGTGGAATGCCTGGTGTTCTGTGGTGTGGCTTGGGTCCGGCACATAACCGACATAACGTCAAGTTAATCATGAGTGCCATGTAGTATCCTTACATATTGTATATCGTACTGTACGTTCAGCATCTCAGGAGTTTCAGTTCTAAgtaaatcatttatttctgGCGTCATATTGTTCACGTTGTGTTTCCTTCGTTCACAGTAGAACTGCTTTGCATGACCCGTGACGgttgttttttctgtacagGTCTCAATAAATATGTGGCACTCCATTCCACTAATTTAC

Function

GO:

id name namespace
GO:0007269 neurotransmitter secretion biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19941 SYN; synapsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256742 lncRNA downstream 94463 13050559 ~ 13053733 (-) True G189404
TU256737 lncRNA downstream 115956 13030170 ~ 13032240 (-) True G189402
TU256708 lncRNA downstream 245036 12902937 ~ 12903160 (-) True G189385
TU256704 lncRNA downstream 251588 12894863 ~ 12896608 (-) True G189381
TU256703 lncRNA downstream 256927 12890834 ~ 12891269 (-) True G189380
TU256805 lncRNA upstream 33236 13315709 ~ 13315945 (-) True G189448
TU256814 lncRNA upstream 50987 13333460 ~ 13334910 (-) True G189455
TU256863 lncRNA upstream 165768 13448241 ~ 13448525 (-) True G189490
TU256867 lncRNA upstream 169681 13452154 ~ 13456427 (-) True G189494
TU256868 lncRNA upstream 172220 13454693 ~ 13456427 (-) False G189494
XM_007229634.3 mRNA downstream 16100 13085029 ~ 13132096 (-) True pparg
XM_022682408.1 mRNA downstream 25209 13085029 ~ 13122987 (-) False pparg
XM_007229635.3 mRNA downstream 27763 13085029 ~ 13120433 (-) False pparg
XM_007229633.3 mRNA downstream 35012 13085029 ~ 13113184 (-) False pparg
XM_007229628.2 mRNA downstream 71454 13062799 ~ 13076742 (-) False tsen2
XM_007229643.3 mRNA upstream 102452 13384925 ~ 13395895 (-) True LOC103033524
XM_022682831.1 mRNA upstream 177262 13459735 ~ 13465405 (-) True LOC111195441
XM_007239755.3 mRNA upstream 211103 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA upstream 211103 13493576 ~ 13533621 (-) False gdf11
XM_007239754.3 mRNA upstream 274549 13557022 ~ 13572611 (-) True LOC103026383
XR_002651608.1 other downstream 71680 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 528630 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 802814 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1103903 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2156802 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 2036171 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2149194 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3120318 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3551377 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3906192 17188665 ~ 17193747 (-) False irf6

Expression Profile