RNA id: TU256867


Basic Information

Item Value
RNA id TU256867
length 1393
lncRNA type inter_gene
GC content 0.46
exon number 7
gene id G189494
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13452154 ~ 13456427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaTGTATAATTAGCAAACATTAATAAAACGCCTCAACAGGCTTAAAATCACAGATTACAAAAATATCCTGAACTTGAAATTGAAAGGTTTTTAGCCatccaaaataaatatttctctgAATGAAGCTGGTGCATAAGTGAAGAGATTGTTGTTAAACAATCAGACAAATTCCTGAATCCACAGTTCACCAAATTATGGAATGTCATTTGGAGAGGAAGTCTCATCTGCACAGTACAAAATATGAGCCCTGAGCTGATGGACTTTTATACGctggtaaaaaaacaaaacaaactgctCATGTCATTAAGAACATTTTCCACAGAATCTTAGAATCTCAACTTTGGCTgaactgtttttctctttttaaaaggCTTCCAGAATCTGTGAGAATAGAACTGGCGAACAGTCTCTGAGCTACAGGAGAAATTCTTCAGGAAAAGGTAAGGTTCTAGTTTGGATCCGCTGCAGCCCGTCAGTGTCAGTCTGTGTATTTCCTGCTCTGCATGTCTTACAGCCTCAGAGGGGGCATGGGCATGGTGACGTCGCGGAAGAATCGATGGACGAGTGCATTTTTGGCTGAAATTCTCTTGTTGGGGTCATAGTTCAGCATTTGCCCAAGCAGGTCTCTTCCATCCTCGTCTAAAGGAGGCACTACTTTAGCCAGGTCTTGTAGAGCCCACTTCGGGAAGGATGGCTTGTAGTCTGGCATCGAGGTCACTCCAGGCCAGACCGTCTCGTCAGGTGTGCCCAGCGTACGGAAAATCCGGAAAAGCTGATCGATTTCAGAATCTCCTGGAAACAAAGCCCTTCGTGTAATCATTTCAGCAAATATGCATCCCAAACTCCAGATGTCAACAGCTGTGGAGTAATATTTACAGCCCAGCAGAATCTCTGGGGCTCTGTACCACAAAGTCACGACCTCATGGGTATAGGTGCGTACTGGCACGCCGAAAGCCCTGGCCAGCCCGAAATCAGCAAGTTTGATTTCTCCCTGTGCGTTAATGAGAAGATTCTGAGGTTTAAGGTCTCGATGCAGGACCCGATGAGAGTGACAGAAAGCCAAACCCTGCAGCAGCTGGAACAGGTAGAGCTTATTCTCTGTGTGAATGACATCCAGCAGCTTGACAATGTTTGGGTGACTGAGCTCCTTCAGAAGTGAAATTTCTCGAATGGCAGTACTGGGAACACCTTCAGTCTCAGTGTCCAATCTGATCTTCTTGAGGGCCACGGTTTCACCGGTGATCTTGTTTTTGGCTTTATAAACCACTCCGTAAGTCCCCTCCCCGATCTTCTCCACTTTCTGAAAGGACTCCATATCACACATACGGGTCTCCCGCTGTTCCGGGGAGCACAGAtacctcctcctgctcctccactAAAACCGAGTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256863 lncRNA downstream 3629 13448241 ~ 13448525 (-) True G189490
TU256814 lncRNA downstream 117244 13333460 ~ 13334910 (-) True G189455
TU256805 lncRNA downstream 136209 13315709 ~ 13315945 (-) True G189448
TU256768 lncRNA downstream 208170 13243581 ~ 13243984 (-) True G189422
TU256765 lncRNA downstream 240969 13210788 ~ 13211185 (-) True G189419
TU256895 lncRNA upstream 16198 13472625 ~ 13485558 (-) True G189509
TU256927 lncRNA upstream 90103 13546530 ~ 13546899 (-) True G189522
TU257034 lncRNA upstream 484759 13941186 ~ 13943399 (-) True G189600
TU257063 lncRNA upstream 517228 13973655 ~ 14044726 (-) False G189623
TU257069 lncRNA upstream 523489 13979916 ~ 14008260 (-) True G189624
XM_007229643.3 mRNA downstream 56259 13384925 ~ 13395895 (-) True LOC103033524
XM_007229637.3 mRNA downstream 169681 13148196 ~ 13282473 (-) True LOC103031721
XM_022682408.1 mRNA downstream 329167 13085029 ~ 13122987 (-) False pparg
XM_022682831.1 mRNA upstream 3308 13459735 ~ 13465405 (-) True LOC111195441
XM_007239755.3 mRNA upstream 37149 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA upstream 37149 13493576 ~ 13533621 (-) False gdf11
XM_007239754.3 mRNA upstream 100595 13557022 ~ 13572611 (-) True LOC103026383
XM_022682832.1 mRNA upstream 795037 14251464 ~ 14255472 (-) True LOC111195442
XR_002651608.1 other downstream 375638 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 832588 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 1106772 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1407861 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2460760 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 1862217 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 1975240 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 2946364 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3377423 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3732238 17188665 ~ 17193747 (-) False irf6

Expression Profile