RNA id: XM_022682832.1


Basic Information

Item Value
RNA id XM_022682832.1
length 3856
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC111195442
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14251464 ~ 14255472 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGACACCACTGCAGTAAAGATGATAGCCAGCTTGGTCATGCAGTGTTCCAGGTTACCAGTAAAGATAAtcacatggctccatccatagAGGATATCACCTTCATGGATATCATGGCACAGGGCCTCAAGAAAGATGAAAGTAACAGCTGGGTGGCCCCACTGCCTTTCCAGGTACCAAGACAACATCTCCCTGACAACAAAGCACAAGCTCAAAACAGACTGTGTTCACTCATACGGAGCCTTAACAGAAAACCAGAGATGAGACAACACTTCTTTGCATTCATGGAAAAAATATTTGAGAATGACCATGCAGAAGAAGCACCCTGTCTCAAGCAGTATGAAGAGAGGTGGTACTTACCCATTTTCGGCGTATACCATCCGAAGAAACCTGCCAGTATCCGTGTGGTATTTGATTCCAGCGCTCGACAAAACGGAGTGTCACTCAATGATGTTCTGCTGACTGGGCCAGATCTCAACAACTCTCTTGTGGGAGTGTTGATCAGATTCCGCAGGGAAGCTGTTGCTGTGACTGTAGATATACAGCAAATGTATTATTGTTTCCTTGTGAGAGAAGAGGATAGGAACTTTCTAAGATTCTTGTGGTTCAAGAACAATGACCCTAACCAGGACATCACTGAGTACCGCATGAGGGTTCACGTATTTGGGAATAGGCCTTCTCCAGCAGTGGCCATCTACTGCCTTAGACAGTCTGTAAAAGGAGGAGAACCAGAGGTCGAAAAGTTTGTCAACAGGGATTATTATGTTGATGATGGGCTCACATCTCTTACCACTGTTGAAGCTGCAGTCAGTTTGGtaaagaaaacacaggaaaCACTCTGCAAATCCAACTTGAGATTGCACAAAATTGCCTCAAATAAGAAAGAGGTCATGGAAGCCTTTCCAACTCAAGACCGTGCAACTGACTTAAAGGACTTGGACCTTGCCTCAGACACATTACCAGAACAGCGTAGCCTGGGTTTAAACTGGGATCTTAAATCTGACACATTTGCCTTTAAATGTGCTGAGGAAGAGAAACCTTTCACCCGACGTGGTGTCTTGTCTGTTGTGAACAGTGTGTTTGACCCGTTGGGCTTTGTTGCTCCAGTTACCATTGAAGGCAAGTCCATTCTCAGAGAGCTGATGCAAAGGAATGGTGACTGGGattccacactgccaaaagagaTGGAGAACAAGTGGATTTCTTGGCGAAACTCACTCAAAGACCTAAGCAATCTTCATATCCCTAGGACGTATACTGGACTTTCACCCAGCAAAGCTGCTCACAGAGAGCTATGTGTGTTTTCAGATGCCTCAACGAAAGCAATAGCAGCCGTTGTTTATCTGAAGGTGACAGATGCAGATGGCAATAGCCAGGTGGGCTTCGTCATGGGCAAAGCGAAACTGACCCCTCGGCCTGAACACACGATACCAAGGCTTGAGCTATGTGCTGCAGTATTGGCAGTAGAGTTGGCAGAGCTTGTTTCAGCAGAGATTGACGTGCAGCTTGACACTACAACTTTCTACACTGATAGCAAAGTTGTACTTGGCTACATTTATAATGAGACCAGACGTTTCTATGTCTATGTAAGCAATCGTGTCATAAGAATACAGAAGGAAACTTTCGAGTTAATCAATCCTGCCATAGATTCAGATGTTCGCCCTCAGGTTTCCACACTTAACACCCAGGCTACGACAACCCAACTTGGATCTCAACGCTTCTCAAAATTTTCCACATGGAAATCACTGAACCATGCAATTGCTCACCTTAGTCATATTGCTTACTGTTTCCATGAAGACCAGGCCAACAAATGCAAAGGCTGCGAAGGATGGCACCTATGTGAAACAGCATATACAGCTGAGCAGCTTCTACAAGCTAAATACACCATCTTTCGTTCTGTGCAGGAAGAGGCTTATGCTCAAGAATTCGCATGCATCCGAAGAAATGAGAAGATCCCGCAGAATAGCTCTCTCAAAACCTTGGATCCTTTCATTGATGTCCATGGACTGCTAAGAGTTGGGGGTCGCATCAGTGAGGCTCAGTTTGAACAGGATGAAAGGAATCCCCTGCTCATCCCTGGTAAACACCATGTGGCAACTTTACTGATAAGGCATTATCATCAACAAACATCGCACCAAGGGCGTCATTTTACTGAAGGGGCTATCCGTGCAGCCGGCCTTTGGATAGTTGGAGTAAAGAGACGTGTAAGCAGCATCATCCATCGCTGTGTCATATGTCGCAAACTTCGTGGAGTCCCTCAAACACAGAAGATGGCCAACCTTCCACCAGATCGCCTCTCTATGGAACCCCCATTTACGAATGTTGGACTTGATGTCTTTGGTCCTTGGTCAATTGCATCACATCGGACAAGAGGTGGACTTGCACACAGCAAACGGTGGGCTGTTATGTTTACTTGCATGGCAGTAAGAGCAGTCCACATAGAAGTAATAGAATCTCTAGATACTTCAAGTTTCATTAACGCCTTGAGGCGTTTTTTAGCCATTCGAGGTTCAGTAAAACTAATTCGGTCGGACAGAGGGACGAATTTCGTCAGCGCCTCTAAAGAGCTCAACATTCCTTCAAACATCGACAGTGGTTCTGTTTCAAGATACCTGGCGGATCATGGCTGCTCTTGGAACTTCAACCCTCCTCATGCCCCTCACATGGGGGGTTCTTGGGAGAGGATGATTGGGATGGCAAAAAAGATCTTAGACACCATGTTTCTCCAGCTTGGGCCAACAAAGTTGACACATGAGGTACTTACCACCCTCATGGCAGAAGTGTCAGCAATCATCAATGCCAGACCACTGGTCCCAGTGTCTACTGATCCAAAGGATCCAATCATACTAACACCTGCCATGCTTCTTACGCAGAAGGAAAGTATTTCTTCTGCTCCACCAGGTGACTTTGGAGACAGATCTCTATTCAGACACCAGTGGCGGCAAGTCCAACACCTTGCTCAGACCTTTTGGGACAGGTGGAGGAAGCAGTATATCTCTACGCTGCAGCCACGGAGGAAATGGCAGGACAGTCAGCAAAATATGGAGCTAGGGAGCATTGTTCTCCTCAGGGATGACCAATTGAAGAGAAATGAATGGCCTTTAGGGCTTGTCACTCAGGTTTTCCCCAGTCAAGATGGCAAAGTGAGAAAAGTGGAGATCAAGGTCTCTAGAAGGGGAGGGACTAAATTACTCATGAGGCCCATCTCAGAGATTGTTCTTGTTCTTCCCCCAAGGATGGACGATTAGTATTACTTGCTTAGGATAGTGGCATTCAGGCACGCCAGGTGGGGAGTGTTCAGTTACAAGTTCAATGTAAACTTTAATGCCTTTTCATTGGTCAACAGCACCACCTTGTGGTGAGTTTTAGAATATGTCTAGGTTACTGTTTCCTGTTAAACTGAGGCCAAACAGGATGTTGTTGCTATAACACACAGGGAGTAGTCAGCCATCTACCAGTTCATCTTCTGCTGAAATCTGTTTTCATCCTGCGCTTTGAAGGCATCCTCTGTatgtatctaaaatatattacGTTCATTTCATAAAACTGCATCAGTATAGGctagtatttttatgttttaacaagTTTTGGAAGTGTCAGCTAGAGTTACATGTGCCTGTGTTAAATGCTAGTTCATGGTGTGTTTATATGCTGATGCTAGTCTTTTGTAATTTAAGATAACTCATGCACTATAGATTTTCCTTTTGTTTATGGTAGATATGTAAATAATTGTACAACCAGGTTAATTCTGGACTGTATTTCTTTACAGTTTCACCCTTTTTAAGATCATTAAACCTGTGGACAAACAGACAAGAGTCTTCAGAGTCGTGGTTGAAGAAAGGTGTTTATCTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257105 lncRNA downstream 79843 14114204 ~ 14171621 (-) True G189652
TU257097 lncRNA downstream 137983 14113184 ~ 14113481 (-) True G189649
TU257086 lncRNA downstream 142846 14044745 ~ 14108618 (-) False G189638
TU257085 lncRNA downstream 142846 14105824 ~ 14108618 (-) False G189638
TU257084 lncRNA downstream 142846 14107649 ~ 14108618 (-) True G189638
TU257283 lncRNA upstream 14964 14270436 ~ 14270800 (-) True G189768
TU257286 lncRNA upstream 15566 14271038 ~ 14271403 (-) True G189770
TU257289 lncRNA upstream 51462 14306934 ~ 14307296 (-) True G189773
TU257290 lncRNA upstream 52515 14307987 ~ 14308206 (-) True G189774
TU257294 lncRNA upstream 54833 14310305 ~ 14311042 (-) True G189778
XM_007239754.3 mRNA downstream 678853 13557022 ~ 13572611 (-) True LOC103026383
XM_007239755.3 mRNA downstream 717842 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA downstream 717843 13493576 ~ 13533621 (-) False gdf11
XM_022682831.1 mRNA downstream 786059 13459735 ~ 13465405 (-) True LOC111195441
XM_007229643.3 mRNA downstream 855569 13384925 ~ 13395895 (-) True LOC103033524
XM_015605609.2 mRNA upstream 293674 14549146 ~ 14609624 (-) True vgll4
XM_007248302.3 mRNA upstream 293674 14549146 ~ 14587297 (-) False vgll4
XM_007248303.3 mRNA upstream 355479 14610951 ~ 14621412 (-) True tamm41
XM_007248305.3 mRNA upstream 369350 14624822 ~ 14638350 (-) False prph
XM_007248304.3 mRNA upstream 369350 14624822 ~ 14638348 (-) True prph
XR_002651608.1 other downstream 1174948 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 1631898 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 1906082 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2207171 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3260070 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 1063172 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 1176195 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 2147319 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2578378 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2933193 17188665 ~ 17193747 (-) False irf6

Expression Profile