RNA id: XM_007248302.3


Basic Information

Item Value
RNA id XM_007248302.3
length 5601
RNA type mRNA
GC content 0.40
exon number 5
gene id vgll4
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14549146 ~ 14609624 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCACACGCTCTCACCTCCATACCGAGCAGAGGCAGCGCGCGAGCGGCGGTGCAGTCGACTTACAGCGGGCTGTGAGGAGAACCGGCGcgattattttgtttttgtcccCGATTCATCGATTAAATCCTTTTTAATCGTTTGCATTTGATTATAATCGCGTCGTTTAAACGGGCTGAacgttttttctttatttgtttgtttttttttcagcacggGAGAAGTTTAAAGGCTGGGCCTTAAGCTTTTGAAGGGAGAAACAAACCACAaactaatttaacattttacattttgcaaCTTTATTCGCGAGCAAAAAAGCTGGTCTTTTTGCTGTCAAGTGTGATAAATAAATGCTTCTTACGAAAATGGACCTGTTGAACTACCAGTACCTGGACAAAATGAACAACAACATTGGCATTCTCTGCTATGAAGGCGAGGCTGCACTAAGAGGAGACCCCAGATTGCAGCCCATGTCCCTGTCGTCTGCAGTCAGCAATCACAGGACAGGGCCGCCTCCCATCAGCCCCAGCAAGAGAAAGCACAGCGGGGACGCGGCCGACGACGACTTCGACTGCAGCAACGAGCATGTGGCCAAGATGAGCCGGTTGTTTGCTGCACAGCTAGGCAAGCCTGCCAACGGGGACTACCGCAAGGACCCCAGAGATCGCAGCCGCAGCCCCATCGAGCGCGCCGCCGCCCCCTTCATGAGCCTCCACGACGGTCACCTCTACGCCCACATGTCCAGCCTGGCCATGGACCAGCCCCTCGCACTGACCAAAAACAGCATGGACGCTGCCCGCACTGTCACCATCTCGCCTACTGTCAGTCCCGTCGAGCGCCAGCAGAATCGGCCCTCTGTGATCACGTGTGCCCCGGCCAACAACCGCAACTGTAACCTCTCTCACTGCACTGTGTCTCACAACGGCTGCTCACCCAGCCTGCCCACCAACTACAGGAGACCCTCCAACACAAACACAGCCTGCGACCCCGTGATCGAAGAGCACTTCCGTCGCAGTCTGGGCAAAAACTACAAGGAGCCGGAGCCGGTCACAAACTCTGTGTCCATCACTGGATCGGTGGACGACCACTTCGCCAAGGCGCTGGGCGAGACCTGGCTGCAGATCAAGGCTAAGGGCAGCTCTTCCGGAAGCCCCGACTCGTCCCCGAACAGTCACATGGTCAACCACAATCACTCCCCCTCTCTTGTTTCATGAAAAAGAGGACCAGCTTGCCCCCCCTTTCACTCCTGGCCCCGCCCCCTTTACTCTCAAAAAcaaccaacctaccaaccaaccatgCATGTTTCAGCTTAAAGCAGCGCTAGTGTATAGCCATGTATGTACATACTCACTGAagactgtttttcttttcttttatcttttccttttttctttatagaGTTTTTTGTTTAGTGTACTTCAGCTTGGCATTTGATTCGGCTGCCCACACTACAACTCATTTAGTTTATGAATTAATGAGCAGGACACATTAAAAAGGTTgaattttttggttatttctccTAGTACATATGCCAGCTTGCATCCTAACCACCTGCCCGCCTCAGATACCAAAGAAACCTCTGATGcaaatttttgttttgtaattataattttttttgcccGTTTAAAAGAgagccatttttctttcttgctcCAGCTGAATTCTCCCTCCTCACCAGTTGTCTCGCACCACGGTCTTCTAAAGGCGGATTTATACTTCTGTCATACTTCTGAGTCTATGATGTAAGTTGCTCAAGTTGCAGTGTTTGCTGCCTTGCGTATCCTGTGTCCACATTTCAGTTGTTTGTGTGCATCCTCAGAAATGCGCAACGTGCAGTACAAAAATGATGGGGCATAAACTGTTGTGAGCATTTATACGTGTGCGTTTGTATATCTAAATTGCTCTGCAGTTAAACCTCCAGAACACTAGGTGGCAGCGAAGGCAGAAATTAATGCGATGTGCAGTATGATGTTCAGTACACACAAAAATGCTAGGGGACAGTGCAGACACTCATCTGCATCAACTTGATGAAAAGTCATTAAGGATGGCTACCCAAATCTGGTGTGTTGTTGCAGTTTAAGAAAGGTGGAGGCCTCTAGTGGAAGCCTCCAGTAAGACATGTAGCACATTCACAATGTAGCCAATACACAGACAGTTGCCCCTGACTATTTTTACGTAAATGCACGGCCCTAGAGCGAGAATATCTGTAGCATAAGGTGTGTGTCACAcgattataaatatattaagtcGTAGATTTGAAGTACAATATTTAATGAATCCGCCTTAACTCTTCACTCCACCTTAACACTGCTCCCCTGTTCTCGTATGTGAAACTTGAAATGGAAGAAAGGCCTTTTTTTGCACTGTTGATGGCTTGAggtcattaatattaattaggTGGCTAATAAGGCTTGTACTTtggtttagttgttttttttccttcagaaAAGGAGAGGAAACTGCTAACAGCGACTGTTGTTGAGGGATGATCCATGTTTTATGTTCATTGTTGAAAAAATTGTTTTGGGGAGATTACGTTGTTCtatgatttctttcttttttttggtgccGACAACTGGACTGGATTGcatcatgtttattttttttttcagccattttttttctttttcttttaattaagggcatttttttgtcttttttttcccccaagcaCTGTGGTTTTTGGTAGAGtagattttaaggtttttaaggGTAAATATTTAAGGGTAAACGATTGATGCTCACCGGTGCatgttgttttctttctttttcttttttttttttttctcggttCGTTTGcttatttgttgtttatttgttttaaatagctGGTATCTATTATTGTGTAGACATTTCATTCTTAATACTATTAGccttttttctcagatttttagtttatttttgtcaGTAACAATCGTAGGTAAACTTACTGCTGGTACAGTTGTactcaatattattttttattcaatattcaTTGTGGTAGCAGCCAGATAAAGAGGACAGCCTCTGGACAGGCCatcttattatatattaacagttggatttatattgtattaatccGTGGTACAGGATACTATTAGCGTTTTGCATGACTGaaaaccaacagcagcagctatgGACAGGTCAGCGGCGAGAGTTGACCATCTGCAGAAAACTCTGAGAGCTAACGTTTGAATTTCTGCTTTTCATTTGCTTCATACTGATTGACTGCAGCTTtcatactgttttgtttttcttatctTTCGTTTGgtcaaacagtttttttatcgTACTGCCTGTACTGAGATTAAACACATTCCTCCGCTAGGGAACCGAACTTCGTACAGGTTTTGTTACAGGTTTTACCTCTGCTCTCATTTTCAGCGCAGCAAACTACTGCTACTAACCCGTTAGTAAACGTCTTTGTTGTGACGAGGTTATAGCGTTTAGAGAGGCTGTTCTCATCTTAAGCTTGTCCGTACATTCCATCATTACGTTAAAAACCATTGGACGCTTGCTGCCAGACGGCCCTTGTTGgtgccaattaaaaaaaaaaaatctcaaaggTTATGTTCAGACTGTAGACTGTatccagatttattttaaaagtgtggacaggaaatcagatttttggcatatctacATTGTATCaagattgttattttatttttggaaatCTAAACAGCCAGACTCcaaattaaatcagatttttggaaCATCTTTATTaaatctagattttttttagatagtcAAAACAGCCTAAAATGCATAAAATCAAATTTGTCAtattttgattgtattcagattCATTTATACATCCAGAAATcccagtgtgtttttttgcaaatcTGATCCGGACCACATTTAGAGTTGGGAAGTTTATTGGGAATCCTTCATTACGTGATAAACCTCGATACCACGGCAACCACTAAAATGCAGATACGCAGATTTGTGATGTCTGGACatgcaaatctgatctgatcacgTGAAGGAGAATGTGGACAGTTGTCTCAAATCTAAAGAGATCTTATTTAAGATTTGCTCGCAGTCTGAACGtaactatatatctatatatcggACGACTATTTTCCACGACTATTTTTCGAGTACACTTTTTCGTACTCGTTTTAAATACgaacaaataaaactaaacaaaaaaaggcgTCGTAAACTGCATTTGGCCATCAGCGTTGTTTTTGTGCGTGAATACGGGAGTGAAATAAAACTACGCCATCTATGTCTTCTAGAGGTCAAAGTCAACataatttcacttttttttttcccacactaCCAGTTTTTATTGGgtagaaaacttttttttcttctgtttttgacTCTCATTTACCCTGCAGGCTGTAGGAGAATAAATCACTTATTGAGGACTTTTTATATAGGTAACTATAAGACCATCATTACGCTGTGCGTAACGAATGTACAGAGAAAACAAATCGTAGGTATTTTTTGAGGAACAATTAATTTGTTAATGATATGTAGCTATTTAATTTTTCCCTGTCCTTTTATTGtaatcatgctttttttttttttttggagaaaaaagTTGATCTTTTTCATTTGTAGATTTGTCTGTTTAAAGTGCAGGAACACAGTTATTCTATGAAACACTGCGGTATAGCCACTcgtgtattattaatatttctgaAGGCTACTGAGCAGCCTTCAGCTTTGATACAGCTTTCAAACACAGAGGCTCTTCAACTGTCTCTGGAGACAAttgaacaaaatacaaaaccacAATCTAAAGAAAatttgctcatcattctcttattttttcggCTACTCGTCTGGGATGAGTAACTCCAAACCCTACTGGTCATTGTCATTTTAAGTGCAGTTCGATGTTTTTTACTAAAACTTCTaaggtcagtgtaacatttattaattaaattttatgactgtttaaGGCTAAATTCTAATTTACAGTTGGGTGTAAAACCTCACTATTGTTTCCCCCATTTGGTGTAGTTtagaagaaatgttttttttttaaattgctttaccaattttctagtttttaatttttgtcttttgcAAACATAGTTTCAGGGGGAAAACAAATAATCTTTACTCAACTTCCAATGTTGCATCTTAACAAAAGTAGATTAGAATATAGAAAagagaaaatcagaaaataaagtgaGGAGTCCTCTTTTTTCCTGAAATTTATATTGTGAGTGacagaattgaaaaaaaaaatgattaggaaaaaaaagaaacaattggTACTATACAAATAATGATATTTTACACCTAATTTTCTGATGTAGAATTCAGCCTCATTCAGTCAGAAAATGAACCTGATAAATGTTACACCGGACGTCTGAAAACTGTAAGGAAGATGACTTGTGCTTCCGAAAAAATAATTCACAATATAAATTtaacattaagaacaaaaaaaaagcaatctgTCATTATCACCATCATGCCTCTAGTGTAGCTCTGAACACCCCGGATGAACGACTGGTTTGTAAATCTGTATTATACCTTCATTTCGTGGCCTGGGTTTTTCTTTTGAgtttaaaaaagattaaagaaAATTGGCAGGCCATTGTTTTGTACTTAAAGTAAAGTAGCCTCGATGAACAATAAAGTGCTCTTAAACCACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257323 lncRNA downstream 2501 14545906 ~ 14546645 (-) True G189803
TU257307 lncRNA downstream 125476 14420713 ~ 14423670 (-) True G189789
TU257295 lncRNA downstream 223849 14324804 ~ 14325297 (-) True G189779
TU257294 lncRNA downstream 238104 14310305 ~ 14311042 (-) True G189778
TU257290 lncRNA downstream 240940 14307987 ~ 14308206 (-) True G189774
TU257328 lncRNA upstream 7699 14594996 ~ 14596574 (-) True G189808
TU257334 lncRNA upstream 120438 14707735 ~ 14709526 (-) True G189814
TU257344 lncRNA upstream 125586 14712883 ~ 14713733 (-) True G189821
TU257346 lncRNA upstream 130139 14717436 ~ 14799628 (-) True G189823
TU257357 lncRNA upstream 172491 14759788 ~ 14760374 (-) True G189834
XM_022682832.1 mRNA downstream 293674 14251464 ~ 14255472 (-) True LOC111195442
XM_007239754.3 mRNA downstream 976535 13557022 ~ 13572611 (-) True LOC103026383
XM_007239755.3 mRNA downstream 1015524 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA downstream 1015525 13493576 ~ 13533621 (-) False gdf11
XM_022682831.1 mRNA downstream 1083741 13459735 ~ 13465405 (-) True LOC111195441
XM_007248303.3 mRNA upstream 23654 14610951 ~ 14621412 (-) True tamm41
XM_007248305.3 mRNA upstream 37525 14624822 ~ 14638350 (-) False prph
XM_007248304.3 mRNA upstream 37525 14624822 ~ 14638348 (-) True prph
XM_022682436.1 mRNA upstream 60509 14647806 ~ 14654334 (-) True LOC111195382
XM_022682435.1 mRNA upstream 68948 14656245 ~ 14659947 (-) True LOC103046666
XR_002651608.1 other downstream 1472630 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 1929580 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2203764 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2504853 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3557752 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 731347 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 844370 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1815494 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2246553 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2601368 17188665 ~ 17193747 (-) False irf6

Expression Profile