RNA id: XM_007239755.3


Basic Information

Item Value
RNA id XM_007239755.3
length 4486
RNA type mRNA
GC content 0.45
exon number 3
gene id gdf11
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13493576 ~ 13533622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAGGGGGGCTCTCCAGGCGCGTTTGTACACTTGTCAGTGACAAcaccaaaaaaagagaaacaccCCCTCTCCAAAACcggacaaaaagaaaaaaaaacgtgaccAGGCTCCCTCCAGCTTCCCAAGTGTCAGAACCAGCGAGAACCAGCATCCCACCAGATCTTCCTCCACTAGGATGCACTGAAGGATCCTTGTCCAACTACTTTTGGACTCCTGTGGACTCGTCCTTTTGTTTGACCTCCATCCTGGTTGGTTATGGGAACTCACACTTGAAGGGGAAGAAGAGCGGTTTAGGCCGGCTTTCTGAGGACTCGCAGGACCCTACTCCATCTCCACCTTCTCCACCATCTGCTTCCACCCAAAGCCCACCCGGAGGTCCGCTTTGGTACCGGGTAGAACCGTAGCACAGCGCCATGGCGAGCTACAACTTTCTGCTGTGTCTCACAGTTCTGGTGGGGCTGGAACTCTCCGGCAGCGACCAGCCGGACTTCTCCATCCCCCCTGCCCGGGACGGGATGGGGTCCCGGGACTTGGATCTAGACCCACACCTCCACCCGCACCACCACCCGGACCCGGACCCGGACTCCCGGCTCTCCCTGATCGAGGTAGAGGACTCCGGAGCCCGCGACTGCTCCGCGTGCGTGTGGCGCGAGCAGAGCAAAGTGCTGCGTCTGGAGACCATCAAGTCCCAGATCCTCAGCAAGCTGCGGCTCAAGCAGGCGCCTAACATCAGCCGCGAGGTGGTCAACCAGCTGCTGCCCAAGGCGCCCCCCCTGCAGCAGCTCCTGGACCAGCACGACTTCCAGGGGGACGCGTCCCCGCAGGACGAGTTCGTGGAGGCGGACGAGTACCACGCCACCACCGAGTCGGTCATCACCATGGCCTCCGAGCCGGAACCCATCGTGCAGGTGGATGGGAAGCCCAGCTGCTGTTTCTTTAAGTTCAGTCCTAAGCTGATGTTCACCAAGGTTCTGAAAGCCCAGCTGTGGGTGTACCTTCGGCCCCTGCAGCAGACCTCCACCGTCTACCTGCAGATCCTCCGACTCAAACCCGTCACCGACCAGGGCAGCCGGCACATCCGGATCCGCTCGCTGAAGATCGAGCTGAACTCCAGGTCCGGCTACTGGCAGAGCATCGACTTCAAGCACGTCCTGCAGAACTGGTTCAAACAGCCGCACACCAACTGGGGCATCGACATTAACGCCTTCGACGAAAGCGGCAACGACCTGGCCGTGACCTCTCTGCGACCGGGAGAGGAAGGGCTGCAGCCGTTCTTAGAGGTGAAAGTTCTCGAGACCACCAAGCGCTCGCGGCGGAACCTGGGCCTGGACTGCGACGAGCACTCCACCGAGTCCCGCTGCTGCCGCTACCCACTCACAGTGGACTTTGAGGCTTTCGGGTGGGACTGGATCATCGCACCCAAGCGCTACAAAGCCAACTACTGCTCGGGCCAGTGTGAGTACATGTTCATGCAGAAGTACCCGCACACTCACCTGGTCCAGCACGCCAATCCCAGAGGCTCGGCGGGTCCATGCTGCACCCCCACCAAGATGTCTCCCATAAACATGCTCTACTTCAATGACAAGCAGCAGATCATCCACGGCAAGATTCCCGGCATGGTGGTGGACCGCTGCGGATGCTCTTAAACAAAAAGGCAGAACTCATTCAGGCTCAGCATTGTCCCACCTGCGTCATGGAGTATCTCCTGTTTTATTTCCTCGTCCCTCGTATCCTGGAAGAGCTACACGACACCTGAAGGAGGCCATCACATTAGTTCATCACTGTAGATCAACAGATAACAGATCATTCATTGTAAAGCTGTATAAACTGAGGCCTAGCGGCACAGATCCGTATGAATGCTTTCAGAGGGTGAGTGAGGACCAGCTGGTGAGAGAAAAGCGAGACGAAACAAATGGAGAAgagacaaaaatgtatatctttaatgttttagatttttaagctgtttgtttgtttgtttgatagtTATATAATAGATTATAAGATTTTTAAGCCTTATACTTCTTTATCCTTCTCTAGAAAGGGAAAACACAATACTGAGAAGCAAACATTTTATAGCACCATAAATACTGGGACAGTAAAGTCAGAATTGTCTTTTTAACATCTTTTGGGGGTGTTCCTTGTATGCAGTGGTCAGAACTTATCAAAAATGCTACAAGAAAGGTCAACCACTTGTAAGGTAAACCAGCAAACATGGATGCCCAAAGCTTATTGATGCTTATGGGGAGGACCTCATGCAGGAACCTCTTTATGGATCATACATTATAGGACACCTTCAGTGGTACTGAAAAGTCTGTTTGGGTGGTACAAGCAAGATCTACACAGTATTGGATATACATAGtattaggcaggtggttttaatgttatggcaaaTTGGCCTTGAATCAATTCAGTTCTGGCCCTATATAAGTTTTGTGAAATCCTGGAGTCCATGCTTCGATGGGACAGAGCTCTTTTGGTGGCACAAGGGTAATTACCATAGTAATTCATAGTAAGGCATGTAGTTTCAATATTATGGCTGATTTACATTGAGCTAATTTAGTCCTAAAACTtgactaaaaaagaaaaagtaggatccagtacttttttactACTAAGAGATATTGCCTAAAGAGTCACTTCACTGTCCCAATAATTATGGAAAGCTTTTCCTCtctaaacatgaaaaaaacatcCCTATCAATATATTTCAGATTACAAAATATTCCAATTttccacacataccccacaacCACAAACAAAATGATGCCAAAACACAAGGACAAGATAGTGCCGAAAGCATTCTAGGGTagaccaccaccatcatcaccaccccCCCACCCTCCTCTCTGCAAACGCATCTAGCACCCCAGTGCGAGATTCCCGAGAGTCCAGGCACCCTTTCATGGCCGCTTTGATCTTCCTTTTACTCGTGATCTTgtaaaaaagactaaaagaaaaaagaagaggacggaaaagagaaaagaaagggctttttttcttctgttctgtTAAATGAGAACAGGAAAAGGGTTTGCCCAAGCAATCGAGTTACGACGGTTCTTCTGACCGCAGCACTGACTCAACACATGAAGCCTGACCTTTTGAGCTTCTGCCCCGCCCACTGTGAAACCCGGATGGGCCTTTAGCTCTACAGGAGAGCTGAGTGCAGGTTGTGAAGTTTGGATTTTGATTAATTTTATGCTTCTATGTTCCAGTAAGGATTTAATGTGAAACTTTAGTCTTTAACTATAAGTATTCTGTTCAGTGTACTGTGGGTGTTAGCTGTGCACATACACTGTATGTAGTTGAAGGTCAAACAGGACTGCCTGAATCTATCCAGTTTGGTTCAGATGGAAAACTTTCTTATTCAGTCCTCTAAATGAGGTTGAGAAAACAATTGTGTTAGTGTAACgtacaaacacaaaaataaaagtcaaagttaTTTGTTTTGCTAATGTTTTACATTGATTAACTTtgattaacaaattaaaagcaaaatattcagaaaataaataaaatgttaattctaATTTGGTGTCCAAAGAGGTAGGTCTAAAGGACCTACACTGAAATACCTGTAGCATTACagtttgagcaaaaaaatctaaacctaaatttCCAAGTCAGGATCAATGacactaaaacattttaatatttcccCAATATTATgtgaaacatataaaaaaatgtctttcagTTTACTTAAACATGTTTTGGACCTCACTATAAACCACATACACAACACAAaggatttacttaaaaaagtcaATTTAGTTAATAGTCCATAAACCTTAATGTAATACATTGTGCTACTGTCTAAAGTACAGTGAACAAGAATTGGCCTTGTAAGAGTCACTGCCCATATTTATGGGTTTCATTCATaggtaatatatatttaactgaaacccATTTAAAACTGATTCAACTCTATACAAGATTAATAAACAGATAAAGAACCTCTAATAAGGAAGTAAAAGCATATCTGCATAACTGATACATAGTAAACACTAACCCAGCTGTGATCTAGAACTGTAAGGAGGACTGTAAAAGGAACCTGTAGCAGACTTGTTGTGGCATTACCTGCACTACATCACACAATTCAGATTCACAACATTCACAACCTAATTGTGCCTAATTGAAGGGACACTAAAGCCAGGCTTCTAAAGATATTTCTAGAAGGTAGGGGGAACTTCTGAGAAACAGCATTGGCCTTTTTTGCAAATCCACATCCAAAATTTTGCCAATGTCCAAAAAATTCACTACAGAGTAGTTATTTATGCTCCTCccaccctcaatgtacatcATAAGAATGCGGTTTCCTTCATTTCTGGGTTTCTACTGACTCGACTACACTTCTTTTTTGGACAAATGTCTTGGCTTATCTcgtttattttacaaaatatcaTTCACACACTTCAACAAGCCTTGTTTTATCAGTATGGTGAACTCTAAAAGTgcttaaaacctaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22679 GDF11; growth differentiation factor 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256895 lncRNA downstream 8018 13472625 ~ 13485558 (-) True G189509
TU256867 lncRNA downstream 37149 13452154 ~ 13456427 (-) True G189494
TU256868 lncRNA downstream 37149 13454693 ~ 13456427 (-) False G189494
TU256863 lncRNA downstream 45051 13448241 ~ 13448525 (-) True G189490
TU256814 lncRNA downstream 158666 13333460 ~ 13334910 (-) True G189455
TU256927 lncRNA upstream 12908 13546530 ~ 13546899 (-) True G189522
TU257034 lncRNA upstream 407564 13941186 ~ 13943399 (-) True G189600
TU257063 lncRNA upstream 440033 13973655 ~ 14044726 (-) False G189623
TU257069 lncRNA upstream 446294 13979916 ~ 14008260 (-) True G189624
TU257062 lncRNA upstream 507609 14041231 ~ 14047697 (-) False G189623
XM_022682831.1 mRNA downstream 28171 13459735 ~ 13465405 (-) True LOC111195441
XM_007229643.3 mRNA downstream 97681 13384925 ~ 13395895 (-) True LOC103033524
XM_007229637.3 mRNA downstream 211103 13148196 ~ 13282473 (-) True LOC103031721
XM_022682408.1 mRNA downstream 370589 13085029 ~ 13122987 (-) False pparg
XM_007239754.3 mRNA upstream 23400 13557022 ~ 13572611 (-) True LOC103026383
XM_022682832.1 mRNA upstream 717842 14251464 ~ 14255472 (-) True LOC111195442
XM_015605609.2 mRNA upstream 1015524 14549146 ~ 14609624 (-) True vgll4
XM_007248302.3 mRNA upstream 1015524 14549146 ~ 14587297 (-) False vgll4
XM_007248303.3 mRNA upstream 1077329 14610951 ~ 14621412 (-) True tamm41
XR_002651608.1 other downstream 417060 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 874010 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 1148194 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1449283 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2502182 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 1785022 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 1898045 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 2869169 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3300228 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3655043 17188665 ~ 17193747 (-) False irf6

Expression Profile