RNA id: XM_022682408.1


Basic Information

Item Value
RNA id XM_022682408.1
length 2434
RNA type mRNA
GC content 0.50
exon number 7
gene id pparg
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13085029 ~ 13132096 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCACCCCCCTCACCCCCTACTAAAGAACGCAAAGGTGGGCAGTTCAGGCGCTTGGCCGAACACCCACCTCCAGCTGTAGGTGTGGTGTAGTGGGGAGTGGTGTTTTCTCCAGGGCTTTTGATTTGAAAGCATGAGCTCACGctatGGTGGACACACAGATGTTTTCCTGGCCCATGGGATTTGGCCTGAGCACCCTGGACCTGGAGGAACTGGACGACAGCTCGCACTCTCTAGACATGAAGCCTTACTCCACGCTGGACTACCCAACCATCTCGGGCGCGGAGTACGAGCCCAGCCCGCCCCAGAGCGAAATGACACACATGATGGACCTGACGCACATGTACAGCTACCGAGCCCAGGAGGCCAGCTACAGAACCCTGGATGCCAATTACAGAGCACATGAGAACAGCTACAGAACACACGAGGACAACTATAGAACCCATGAGAACAACTATAAAAGTCAAGAGAACTATAGAACCCAAGAAAGCAACTATAGAACCCATGAGAACAACTATAGAACCCAAGAGAACAACTATAGAACCCAAGAGGAAAACTACAGAGCTCAGGAGAGCAGCTACAGAATGCAAGAAACCCAAAGTTCTATAAAGCTTGAGCCCGAGTCTCCTCCGCAGTACGCAGAACACAGCCTGTCCTTCTCCAAACTGCAGGACGACCCGTCCGCCTCTGTGCTGAACATCGAGTGTCGGGTCTGCGGGGACAAGGCCTCGGGCTTCCACTACGGAGTCCACGCCTGCGAGGGCTGCAAGGGATTTTTCCGCCGAACAATTCGTCTAAAGCTAGTCTACGACCACTGCGACCTCCACTGCCGCATCCACAAGAAGAGCCGCAACAAGTGCCAGTACTGCCGCTTCCAGAAGTGCCTGATGGTGGGCATGTCACATAATGCCATTCGCTTTGGCCGCATGCCCCAGGCAGAGAAGGAGAAGCTCTTGGCCGAGTTCTCCACCGACATGGACCACATCCACCCCGAGGCGGCCGACCTGAGGGTCCTCGCCAAGCATCTCTATGAGTCCTATCTCAAGAACTTCCCCCTCACCAAAGCCAAGGCCAGAGCCATCCTCTCAGGCAAGACCAGCGATAATGCTCCTTTTGTTATCCACGATATGAAGTCCTTGGCAGAGGGGGAGCAGTTCATCAACTGCCGGCAGCTTCCCCGACAGGAGCAGCGCCGGACCAGCATGGGCCTGATTCAGTCAGAACTGCAATGTGAGCTGGAGCTTCGCTTCTTCCGCAGCTGCCAGTCGCGCTCGGCCGAGGCGGTCAGCGAGGTCACAGAGTTCGCCAAGAGCATCCCGGGCTTCGTCAACCTGGACCTGAATGACCAGGTTACACTGCTCAAGTACGGCATGATCGAGGTCCTCATCATCATGATGTCGCCACTCATGAACAAGGACGGCACGCTGATCTCCTACGGCCAGATCTTTATGACCCGTGAGTTCATCAAGAGCCTACGCAAGCCTTTTGGTGAGATCATGGAGCCCAAGTTCGAGTTCTCAGTCAAGTTTAACATGCTGGAGCTGGACGACAGCGACATGGCGCTCTTCCTGGCCGTTATCATTCTCAGTGGAGATCGCCCAGGCTTGCTGAACGTGAAGCCCATTGAGGTTCTGCAGGAAAACGTTCTCCACTCTATGGAACTCCACCTGAAGATGAACCACCCCGACTCGCTCCAGCTCTTCGCCAAAGTGCTGCAGAAGATGACGGATCTGCGGCAGCTTGTCGCCCACCATGTGCAGGTGATGCAGCTGATGAAGGAGACAGAGATTGACATGTGTTTACACCCACTCTTGCAGGAGATCATGAAGGACTTGTACTAGGCTGTGGTTTAGCAGCCTGAGCCAGAACTGTAGTGATAGCGCATCGAGGGTTTGTTTGGGTTGtcgttttatctttttttttctttcggtGAAGAAGATGAGCCTCCACTGACAGCAAGAAAAGAACTCATCTGGTCGGCAGCGAGAACTTATGCAGTTAGACAAAGCAGGGGATTCTTCgataatgagagagaaaatatcAGTTCTGACAAAATTCTGtcaagaaataaaatgaaccGTACGCACATGTATTCAGACTGGAGCTGCCAGGAGGAGACGACATAAGAGACCCGGACATGTAAAAATGGGAATTTTCGAAGCAACTTACTGTAATTAATGTTATCACTGTTTGCAGCAGCAGGTGACCTTTTCCAAACTTTACAAACTGTACAAACTTTGATATAAAAGGAGATGAGATTTTTTCTCATAAAGAAGGTTTTTACTGAAAATTGAAGATGTGATACTTTTTATTCCTAGAATAATCCCAGATTGTCTTACACTGCCTTTTAATCTTTGCTAAATAGGTAAAATAAGTGTTATCTGTGTACATAAGAGAATGTCACatgtttgcttttgttttacGTTTGtattgttc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070328 triglyceride homeostasis biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256742 lncRNA downstream 31296 13050559 ~ 13053733 (-) True G189404
TU256737 lncRNA downstream 52789 13030170 ~ 13032240 (-) True G189402
TU256708 lncRNA downstream 181869 12902937 ~ 12903160 (-) True G189385
TU256704 lncRNA downstream 188421 12894863 ~ 12896608 (-) True G189381
TU256703 lncRNA downstream 193760 12890834 ~ 12891269 (-) True G189380
TU256761 lncRNA upstream 66791 13189778 ~ 13194807 (-) True G189417
TU256763 lncRNA upstream 84053 13207040 ~ 13210220 (-) True G189418
TU256765 lncRNA upstream 87801 13210788 ~ 13211185 (-) True G189419
TU256768 lncRNA upstream 120594 13243581 ~ 13243984 (-) True G189422
TU256805 lncRNA upstream 192722 13315709 ~ 13315945 (-) True G189448
XM_007229628.2 mRNA downstream 8287 13062799 ~ 13076742 (-) False tsen2
XM_007229629.3 mRNA downstream 8291 13062799 ~ 13076738 (-) False tsen2
XM_022682407.1 mRNA downstream 8508 13062799 ~ 13076521 (-) False tsen2
XM_022682406.1 mRNA downstream 8516 13062799 ~ 13076513 (-) False tsen2
XM_015605061.2 mRNA downstream 8516 13062799 ~ 13076513 (-) True tsen2
XM_007229637.3 mRNA upstream 25209 13148196 ~ 13282473 (-) True LOC103031721
XM_007229643.3 mRNA upstream 261938 13384925 ~ 13395895 (-) True LOC103033524
XM_022682831.1 mRNA upstream 336748 13459735 ~ 13465405 (-) True LOC111195441
XM_007239755.3 mRNA upstream 370589 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA upstream 370589 13493576 ~ 13533621 (-) False gdf11
XR_002651608.1 other downstream 8513 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 465463 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 739647 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1040736 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2093635 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 2195657 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2308680 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3279804 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3710863 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 4065678 17188665 ~ 17193747 (-) False irf6

Expression Profile