RNA id: XM_015605061.2


Basic Information

Item Value
RNA id XM_015605061.2
length 1905
RNA type mRNA
GC content 0.43
exon number 12
gene id tsen2
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13062799 ~ 13076742 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCAGTATCTGTTTTTGCCGTTTAGCCAGCTTGCTAACCGCTCGTTCAGGGAAAGCTAACGTCAGTTACAGCAGATGATCAGCGTGCTAAGCTAACTGCCTGTCTGTCTCCAGGGTTACCAACCAGCTAGCGTAGCAGCGTCTCTAATCTTGTTTTTCTGAGGCGTTAAGCCATTGTTTACTAGAATTTAGGGTGTTTCTTCTTACTTTAGAAATCACTTAATATCTACAAAAATCTCTATTGACATCTTAATGTTTCTTCTGAGCTCTGTTTGTATTGATTTTCTGCAGTTAGAGCCTAAAGTTACTCTTCTGGGAAGATTTATCTGATGATTTGCTAAAATACATCTCCACCAGAGCATCAGTTAGAACAGCAGATATGGAAGCGGTGTTCCAGGCTCCAAAACGGAGACCAAAAGTTTACGAATCATTTGAGAGCCCACTGCCCGTTCCTTTTACCTCAGTCCAAGGCACTTCCTCACTTCAGGAGGCCCTCATATGCAAAGCCGAGATCATAAACCAGCACGTTATAGTACGAGAAGCTGACCACATTCAAGCACTGTATGGAAAGgGTTATTTTGGTAAAGGAGTTCTGTCAAAAAGCAGACCAGAGCACAGTATTTCAGAACGGTGGGAATACATAGGCAACGAATGTTTACCTGTTATCCCCTTGTCAAGATACCAAAAACTTGTGAGCTGGGCCCATTCTGCTCTCCTGGCTCAGGGGTTAGATGAAGAGGTTATCAGCGAGACCATGCAAAAGCTGACACAACCAATTGAACTTAATTTAAGAGAAGAACATGGAGCAGAACATGATAATGAGccaattaacaataaaaaacatcaaGAGATGGCAGCTTCTCAGACACAGTCTTGTGATAACTTCAGTCAGGATCAGTCGATGGAGAATGAGATAGCTGCAGAGGGTCTAAATGATGACAGAATGGACTCGGAAAGTTCTGAGGCTGAGAAACCTCGTAGACAGGGAGATCCAATGTATGATCCTCTAGCTGAACTCTATCCTCAAGAACCTGAGCAGGTGGATCCGAATGCACTAGCCAAAGTGAAGTGCAAAAGGCACGACGACTGGATCATTCACTGTGGATGTAGACTGGACGAGAGCCAAATGACGAGTGTTCTGGTCCAGTCGGGCAAAGAAAGTGGGTCATGTCTAGTGCATGGATATGTTCTAGTGGAGGAACCTGATGAAGAAGATAATGGGGATCCTAATGAGGATGACATCTCATGTGTCAGAATGGCTAAGCTGGTTTGCAGAATCAACCCCTTTAACATGGTGGAACATCTCCAGCTTAGTTACGAAGAGgctttctttctGGTTTATGCACTGGGGTGCTTGTCAATTTACTACGATGGTGAAGCCCTGTCAGTTCTTCAGCTTTGGCGAATGTTTTGTTCAGTGCAGCCCAACTTTGAGACTAATTACGCCGCCTATCACTACTTCCGCAGTAAAGGATGGGTACCCAAGCCTGGGATTAAATATGGAACAGATTTAATGCTGTATCGGAAAGGACCACCATTTTATCATGCAAGCTACTCTGTGGTGGTGGAGAAAGTGGACGACTCCTTTCAGGGTGCTACTCTGAGACCCTTCAGTTGGAGGTCGTTTGCTGCCATCAGTAGAATAACTGGTAACGTCTCAAAAGAGCTGATGCTGTGTTACGTTATTGTCCCATCAGATATGAACAAAGAAGATCTCTCCTCACCAGAGTTCCTCAAAAGAGTCAAAGTTCAGGAGGTCATTGTCAGCAGGTGGATATCTTCTCGAGAACGAATGGAACAGGACGaaatttaaagattttcttaTTTGCCAGTATGTTATGTACTAAATATTattgaacattatttaaaaaatacacatgtaataaatgaatgcagcttccttca

Function

GO: NA

KEGG:

id description
K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256742 lncRNA downstream 9066 13050559 ~ 13053733 (-) True G189404
TU256737 lncRNA downstream 30559 13030170 ~ 13032240 (-) True G189402
TU256708 lncRNA downstream 159639 12902937 ~ 12903160 (-) True G189385
TU256704 lncRNA downstream 166191 12894863 ~ 12896608 (-) True G189381
TU256703 lncRNA downstream 171530 12890834 ~ 12891269 (-) True G189380
TU256761 lncRNA upstream 113265 13189778 ~ 13194807 (-) True G189417
TU256763 lncRNA upstream 130527 13207040 ~ 13210220 (-) True G189418
TU256765 lncRNA upstream 134275 13210788 ~ 13211185 (-) True G189419
TU256768 lncRNA upstream 167068 13243581 ~ 13243984 (-) True G189422
TU256805 lncRNA upstream 239196 13315709 ~ 13315945 (-) True G189448
XM_022682405.1 mRNA downstream 15253 13033576 ~ 13047546 (-) True mkrn2
XM_007229621.3 mRNA downstream 64189 12994479 ~ 12998610 (-) False LOC103027392
XM_022682401.1 mRNA downstream 64189 12994479 ~ 12998610 (-) False LOC103027392
XM_022682402.1 mRNA downstream 64224 12994479 ~ 12998575 (-) True LOC103027392
XM_022682400.1 mRNA downstream 72531 12983421 ~ 12990268 (-) True LOC111195380
XM_007229634.3 mRNA upstream 8516 13085029 ~ 13132096 (-) True pparg
XM_022682408.1 mRNA upstream 8516 13085029 ~ 13122987 (-) False pparg
XM_007229635.3 mRNA upstream 8516 13085029 ~ 13120433 (-) False pparg
XM_007229633.3 mRNA upstream 8516 13085029 ~ 13113184 (-) False pparg
XM_007229637.3 mRNA upstream 71683 13148196 ~ 13282473 (-) True LOC103031721
TU256647 other downstream 443233 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 717417 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1018506 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2071405 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 3107992 9951985 ~ 9954807 (-) False LOC111195437
TU257791 other upstream 2242131 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2355154 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3326278 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3757337 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 4112152 17188665 ~ 17193747 (-) False irf6

Expression Profile