RNA id: TU256763


Basic Information

Item Value
RNA id TU256763
length 3158
lncRNA type intronic
GC content 0.39
exon number 2
gene id G189418
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13207040 ~ 13210220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCGTTTTTCcttaaaaagaaaggtaaaacaGTCATAATTTGAGTCACCAccagatttaaagtttaaccaaacattttctacatgaggcataaacatcaaaaatgaaataaaatcactccttttaataaaaaagaaacaggcataaaaataaaaataaaaaaaatctggtctCACGTCTCTGTTGCTGGCTCAGGCTGAGGTGTGGATCCACTGGGCTGATTGGCTAATGGGGGTGGGTGGTGTTGATGGTTGAGCAGGTGCTGTCTGAAGCGGTCTCTGATCGCTCAGTTCTTCCAGATCTGAAACCAGTTTCCTGGACCAGTGCTGTAACATTTCAATCACAGCAGGTCCGGTGAAGACGCAGTCCAGCCATCGACCGACAGCTGGACCAAACACAGTCTCTCATCTGAGACtctcctcatgaagtgctctgGTTCAGATGATGTTCACAGTACTGTTGCAGAGGACCCTGTCTCTGAGGGTCAAAACTCCTGTGATGAGCACCACCCCCGCCTTCTCAAACACCCAGAAAACAGCACTGAGCAACATTCAGTCAAAGAGAAAaatccctccaaaaaaaaaaccttaaaagaagaaatcctgAAAGGAATTCTATAATATGGTTAAAAATTGTTTAGCCTcatgaaataactaaaacaaaaattatttccAGCCAAACAATGCTTGATATTTCTAAACtgtataaacattaacattatattgTTGTGCTCTGATGGGGACTCAAAATATAGCTAAGAATATgcaagcaagttcttcattgccagaaatagaaaacatatggaaAGCAAAACAgatagctttgttttatttaaagacatCTGATGTCTCCTTGTTTaagagtcagaaagagagacccAATTCACTGCAGCTCGTAATAGATACAATATTAAGTTTGTCAAATTAAACCTTTCCAAAGAAAGTAAGGTCTTTTCTTACTGGTTTCTAAAATCTACTATCCTCATTAAGAGAATCAAAAGATCAGCATAGACTGAGATACATGAGAACCACTAGAGAAATTAGAtatgtgtattctttaaatctcATTCAGCTGAGACTGAGCTGAAATCAGTCTCAATaagaaaagaataataatagaaaaggcCTAAACCACATGAAGACAGAAGCTGTGTTCAGAAtggctcactcattaactctttcactgtgtagcattttctatttactAAACGAATTATGGAACAACCAAACAataaaccatgtttgtcctgctctgaggacgTCTAATACAACAGCACTGCATTGCATTATAGTATATTTTGAAATTTCTAAATTTTTGTGATGCATTAGGTTTTTCATAGTGAACTATATAGGGAACAGAATGTACTGCTGGGATTTTAAACAGTACTGCAAAAATGGTTTTacactatatagtgcactatttctgGAATAGGGAGCGATTctgacacagccacacacacattatattcaTCATTAGATTAGCTTATAGAATATCAGAGTTAGACAAATGTTagaaacatacacacttacacacacacagacacacacacgcacacgcacaccaAATGTGATAGAAGATAGCAGAAAAGAGATgttttgtctatctctctcactgctttatTCAACAcacgcagaaacacacacacacacattgtatcaAAAGCCTGGAATCCTCATCTCTTTTCTGTTTCAATCAGGGATGACTTTCACAATGTGGACATTTGTACATAACTCATCACTACTACTCAAACATGAAGCTGTCTCACATATTCACTAAACTGTcatcctcagaattctacagcATTCTCCATAAAGATAATGAAACATGTTACATTGAACAGTTCCAGCATGGCTCAATATTCTGCCctactttaatatatgtatattgggTTTATATGCTAATGATTCCAAACCTTTGAACAacactacataaacacacacacacacacacatatagtcTTGGCTCATTTGATTGAAAAGAGCTGCATCATGAATTTTTTGGATTAAGTTTCAATTCTTTAGTTACTTGGGATCCCATTTTGTTCTCTCATTCGATTTTAATGACTCAGAGTAATTTAGCCCCAATAATCACGTCTCACCTTCCTTCTTCTATCCCTGCTTAATACACAATCAGTACCCTgtactattagtattatttatgcACTCCTCCCCACGGTCCCGGGACCTATACTCTAATGACACGTCTATCAATAGAGGCCTCACGACCAGGCTAGTCTTCTCTTTACTTTAaagatatatttacatacatcaATAAAGGCCTCACGACCAGGCTAGTCTTGTACACCGTCATGTAACTATACACTGTCCAGGGCGGAGTGCTGAAGGAAGGATGGAGGggagtaaattaatttaagaacaattgtttacatttaaaatttcctTAATGAGTAAATTAGTTAACCTGTCACTCACCACCAATGTTTGTTGATGAGGCCTGGATTTGCGAATGAGGGGTGAGAGGCCGCACCTGCCCCCGCGGTACTTCGTCCTTATTCTGTGGAATTTTCCCTTGCTTCTGGGGCCCAGCTGTTTTGCTGGAGAGCGTCCTCGGCAGGTGCTTAGTCTCTCCCCCTCCGCCGCAAGACCATGCTCATCCTGTTCCGTGACGCCAAATtgtggtggaaaataatgacaggaagaaagaaatattcagagtctctgagtcttgatcagaatgagtaacaagatttattgagAAGCCACACGTAATGAATACAGAGTGAACTCCTGCCTTGCAAGAGTGCCATGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACAGGTGGTATGACATAATCCCTTAGTGAGCATATCAGACTGGTTCTCAAAACACCGCAAGCAGAAGGAAAAATGACCCTGGCGCCAGAATTGTAGACAGAACAATCCGTGACGTGCACACATACATAGACACACACTGCTTTCCCCAGATAGAAAAACTCTCACTCAGCATCTTAGATATGCTCCTGAGTACACATTATCATCGCATGGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcaataaacaccttccatcacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256761 lncRNA downstream 12233 13189778 ~ 13194807 (-) True G189417
TU256742 lncRNA downstream 153307 13050559 ~ 13053733 (-) True G189404
TU256737 lncRNA downstream 174800 13030170 ~ 13032240 (-) True G189402
TU256708 lncRNA downstream 303880 12902937 ~ 12903160 (-) True G189385
TU256704 lncRNA downstream 310432 12894863 ~ 12896608 (-) True G189381
TU256765 lncRNA upstream 568 13210788 ~ 13211185 (-) True G189419
TU256768 lncRNA upstream 33361 13243581 ~ 13243984 (-) True G189422
TU256805 lncRNA upstream 105489 13315709 ~ 13315945 (-) True G189448
TU256814 lncRNA upstream 123240 13333460 ~ 13334910 (-) True G189455
TU256863 lncRNA upstream 238021 13448241 ~ 13448525 (-) True G189490
XM_007229634.3 mRNA downstream 74944 13085029 ~ 13132096 (-) True pparg
XM_022682408.1 mRNA downstream 84053 13085029 ~ 13122987 (-) False pparg
XM_007229635.3 mRNA downstream 86607 13085029 ~ 13120433 (-) False pparg
XM_007229633.3 mRNA downstream 93856 13085029 ~ 13113184 (-) False pparg
XM_022682406.1 mRNA downstream 130527 13062799 ~ 13076513 (-) False tsen2
XM_007229643.3 mRNA upstream 174705 13384925 ~ 13395895 (-) True LOC103033524
XM_022682831.1 mRNA upstream 249515 13459735 ~ 13465405 (-) True LOC111195441
XM_007239755.3 mRNA upstream 283356 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA upstream 283356 13493576 ~ 13533621 (-) False gdf11
XM_007239754.3 mRNA upstream 346802 13557022 ~ 13572611 (-) True LOC103026383
XR_002651608.1 other downstream 130524 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 587474 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 861658 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1162747 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2215646 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 2108424 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2221447 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3192571 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3623630 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3978445 17188665 ~ 17193747 (-) False irf6

Expression Profile