LOC111195380


Basic Information

Item Value
gene id LOC111195380
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12983421 ~ 12990268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682400.1
caTCTGGACCAGATACAAAGTTCAGAAGCACCTTTTGTCTGAACACACTATTTGTTCTtgtgaacaaaagtattggaactctcaggtgtgttttattgtCCAGGGTTGCTGATTCGTCAATTGAACTATGATGTCAACTACAACATTTGAAGAAAATTCTGATTTTCAAGACAGTGAAGAAAACCTACGAGATCTGGCACAACATGCAAgcatcctttcagaaaataagcCCAACCCTGAGGACTTACTCAGCATTAGCTCTGAACATCCTTCTCCAGTGAAGGATGTTCAGCCTACTAGCGACACCAAAGACACTAAAGTGATGGAACTTATTACCGGTCAGTCTTTGATCAAGTCTGGGATCTTGGCCCATCTACAGCTTGCATCACCTCTCGAGTCTGTAACAGAATTGGTGGAGGTAGAAGAGGCATGTGACTTACAAATTTCAGAAGAACCAATTGCAACCAAAGAGATCTTTCCAACCACAACCGTATGTTACATGTCATTAACCACAGAGGGACTGGGACATGCCTTGGAAGGGGCAGCCAtctttggaaaagtcatggagtCAAACACTCAACCTGATTTAGGACATCCAGAGAGCCCAATGACAGAAGCTTGTAGCTCCGTCCATGAAATTCCAGTTGGGTCGTGGCTTCAAGAAGATTCCTCGAAGATTTCAGTCATCGAATGTCAACAGGTGGACCAGTGCCCTCCTGCTGTGGGTGGTTTTCAGAAGGAAGCAGCATGGCACCAGTTGACAACTTCTTGTGCTAATTCTGGAGTTTTAGAGCTGACCAAACATTCCTCTGTCCCACCTCTTGAAGACCTTATTACCCCCCAAGAAGTACAAATGTGTCACCAAACTTGTGTAAAAGGTGAAGATACGGTTGGTGATGAATTAAGGTTTGACAGAAAGCCAAACTCAGAGAGGTTTCGAGGTCACATCCGTGAAAAGGAAGACACTGCAACCAATGTGGCTAACCAGTCGCTAATTGAAGTTCTCACAGCGTGTGAAGCTAAAGTGGAGCAGTATGAACAGCTCAGATCATCTTCCTTTGACCTGTCTGCTCAGCTGCGTTCTGCCCAGCTTATGGCTGATAGTCTGCATCAGAGAATGCTCAGCCTTGAGCACGAACACAGTCTGAAAGACAAGAAACTACAGGAGCTAACAACTATTCTGGAGAAGACCAGTGAAACACTGCAAGCAAGGAACTGGGAAATGGCTACAATCACTAAtgagctccagcagcttcacTTACAGGTGGAGGCACAGAAGAATGTGCCCGATGCTGCCAGAACAATAACAGCTAACGGACTCGCCACTCCTGACCCACAACTACAGCTGAGCAGGAGCTCTAAAATATGTACACTGTTGTGATAATAACGGTTGATAATGATGATGGTTTTTCactgaaataaaacattcaGCCCTGAATGAAGGGCCTGGTTCTGATATTCTGCACTGGTAAAATCTACCGACTACAGTGGATTAGATCACCACAGTCAGGTATTTAATTATAAGTACTGAACATTGAACATgtgatattgtgtgtatatttatattgtatgtatctACACATtaccactttgaaataaagcaGTACATATTT

Function

GO:

id name namespace
GO:0004690 cyclic nucleotide-dependent protein kinase activity molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682400.1 True 1613 mRNA 0.43 3 12983421 12990268

Neighbor

gene id symbol gene type direction distance location
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding downstream 2604 12973940 ~ 12980817 (-)
LOC103034476 zgc:77375,LOC108431553,LOC108254961,LOC107700631,LOC107758152 coding downstream 11110 12952510 ~ 12972311 (-)
nuf2 nuf2 coding downstream 42961 12926056 ~ 12940460 (-)
shisa5 NA coding downstream 60441 12905330 ~ 12922980 (-)
LOC103025083 LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506 coding downstream 98639 12880822 ~ 12884782 (-)
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding upstream 4211 12994479 ~ 12998610 (-)
mkrn2 mkrn2 coding upstream 43308 13033576 ~ 13047546 (-)
pparg pparg coding upstream 94761 13085029 ~ 13132096 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding upstream 157928 13148196 ~ 13282473 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding upstream 394657 13384925 ~ 13395895 (-)
G189385 NA non-coding downstream 80261 12902937 ~ 12903160 (-)
G189381 NA non-coding downstream 86813 12894863 ~ 12896608 (-)
G189380 NA non-coding downstream 92152 12890834 ~ 12891269 (-)
G189376 NA non-coding downstream 103077 12879945 ~ 12880344 (-)
G189352 NA non-coding downstream 214710 12768010 ~ 12768711 (-)
G189402 NA non-coding upstream 39902 13030170 ~ 13032240 (-)
G189404 NA non-coding upstream 60291 13050559 ~ 13053733 (-)
G189417 timp4 non-coding upstream 199510 13189778 ~ 13194807 (-)
G189418 NA non-coding upstream 216772 13207040 ~ 13210220 (-)
G189419 NA non-coding upstream 220520 13210788 ~ 13211185 (-)
LOC111195455 NA other downstream 269389 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 363855 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 587889 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 804811 12160542 ~ 12178610 (-)
G189055 NA other downstream 939128 12043913 ~ 12044293 (-)
tsen2 NA other upstream 72531 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2328375 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2418939 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3355433 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3579355 16569623 ~ 16599317 (-)

Expression


Co-expression Network