RNA id: TU257066


Basic Information

Item Value
RNA id TU257066
length 3466
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G189623
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13973655 ~ 14047697 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctttttaacttttatttttaaaaatgagtaaGCAGATCATTTTTATGTCCTGTGAATACCAAAATCTGTGTAAACAGCACATATAACATTCGCATTACGTCTCTAAATCTTTATAAGAACACCGTGTGGAATGACATATCAAAAGTCTTCAGagaaacacttttctttttttttattcatctcattcatactcacaaacacacacacacagacacacacacacacacaaatctaacCAGATGTAAAAATATACATCAATCCCAAAAGTTAAAACTGGctattaaaatgtgaaacagtTTTACTTGCACAAACTGAGGTGACGATATGTCACGATGGAGCGAGACCATACCAAAGATCACATGCATGTGCAGCACAGGGTTCACAGTGCATCTCCATTAACGTAGTGCTGAAATAGACTGGTTGAGAGGGTTGAGTTGGTTGCGTTGGTTCCCATCCTGAAAAGCTTAATTTAactcttattcttattctcttCTTTTATGTCTAAAATAACTTGAATTAACCATCTACAGCTCCTTTTATATAGTTATAAATCTATTTACTCTATATCTCCAGTCTAAACACTGCTATTTATCCATCTACAACAAAACAGTACTTCCTCTGAATTCCTCAAATTAGCTGATACTGGGGTAAAAacatagtatataatatatgtcgTAAAAGCTGCTAGCATGTTAGCTTTAACCCGTTCAACCGTTCTACTGCATAACCCCATTACCACCTTCTCACCGTCTTTCTCAATCCTGAGGCCCATATTCACTTAACCTGGTTCCTGCATTTATATCTCATATGGCATATTAAGCTATACTGCATCCATATACTTCCTTTACTGCAAAGACCTAAACATGGGTCCCACTTTATGTGTAGTGTCgctaataactgtataattatGCATTAATTATCAACGCAATAACAGCATTAGCTTGTAGCGCTATGTTCTTCTTAGCTAATTTAAACACTGGTACCTACAAACCTGTAAGACAAACACAGCAGGTTTTTAGACTGGTATTATATAGCTTGTGTTCAGATGCAGACAAAATTTGAAGTCCTCCACACTGAAGGTATCTAACAGATACGCCcactgctctctgattggctgcgtTGACACTCTGCTCCCAATGTAAGTCAATAAAGTCCTACCAGGCATGTCTGTTCACTACGTGGCGATCTCTGCAACACTGACGACCAGATATCACCAGTCATACAAGACCAGACTCCTATCTCTATGAACGGACGGAGACCAAAATATTGGAAACTGAAGGTCAAATGACCATTTCAGAACCATTTTTTGGAATCACTgataatatatgataaaaaacatggattaataatagaccaaaaaattgattttatttgattgtatggCTTTTTATGGTTGCTGCGattgcgcagatctccatatCCCTTCGCCCTATTTAGCATAATTAACAGCAAGCTGATTAGCTCTTTTTGTAGGAACTTCTAAAACTTTAACTGTGTGAAGTGTTGCAAGAAATCCTATTTAAATTGACTTAAAATGCACTAATTACTTTGACTAAATCTAAAAGTGAAGGTTTATTCCTTCCCCTGAATGTTGAAAGGTTTATGTCCAATTATTTGTGGTAAatcttttaatgaatgcatgCAGCTACTACAGGCTGTGGAAATGCACACGTCTTCTCTAGATACTGTAGAGAAAGAAATATtgccagtagaataggactctctggagcagataaacaaatgTAATTAAGGTAATGTGCTGTAATCCGTATACAGAAGTAAATCACTAGTagctacattgtaaatgcatgactgtaaatacacaactacagttattacagacactttatatagtataaagtgggaccaaaacCTGATCTCAATCAAAACCATTCACTTtatctaaataaaaacacaaaaaacctCGACAGCCACCGTTGGGCCACCAGCTTATCATCAACCAGCCTGCCCTTATTAACCCTGACAGTGTGAGTTCACCACTACAGTATTCAACATTTACTAAATGATCTggataaaagagtaaaagtgaaGAACTGAAGAGCTGCGCTCAGGCTGTCGCCTTccattaaatttactttaatctCTGTGAAATAACAGCAAATGTGTGTCGTACACAACAACACTGAGGAGAATGGGTCGGTCACACCGTGCTCGTCCTGCGAGGCAGTGCTAGCCAAAGGACAGAGAATTTCACCAGAACTGGGTTTAGGCTTAAGGTTGTACGTCTAGTAACCTTTAAGGTTGcgttcacacagcagataaAAGTTGATCAGTTAACTTTTGATACAATATGTTATAGCAAAAATGCTAGaaatctgacattttaattATGATTTGGGATGCTTTAATATATGGTACTGAAATCCAATACGGCCAGATCAGAATTTGGACTTTTGTACGCCaaggagaaaggaaaaaaaaaactgaaataagaaGGGGAAATGGATGACAGCAGTGAGGAAAGGGTTCAGTTGTGGCACAGTGAGGTATCAGAGCTCAAAAATATTTGGATTGATTTCTCTTTTCCAATAATATTAGAATGCTCGTGTTACAACTGCTCAGAATTTCTAAAGACAAGGTCAAATACAGCCGcaggatggaaaaaaaaactaaaatataatattctcTCTGATATGCCCAGCTGCAGTCACTGGAACTCCTTGATAGCTCCTGTGATCCTGAAGAAGagagtgaaactgaaacttcacgtgaagcgctGCTTTTTAGCAAATGAGCCGCACTTAAGAAGTGTCAAATCTGTTTAGACCAATGTCGAATATAAATCACATGACCATGTGAtcagcctaaaaaaaaaaaacagatttgatcAAAAGAATTTGGACAATTTTTCgtgccacttttacctgctgtgtgaacgcagCTTAAGAATCCTCTACAAACACACCTGTAAAGTTTGGAATGGTCCGAGATGGATCTTCTACACATTAGAATTATCTCCTACAGAGTAACGCCGTCGCCAAGAGACCGAATGCAGAAACATTTTACAGCACATTTTTACCTTGGCTTCACTTTAAGTACAGTAATCACTAGTGTCACAAAAATAGCAACAATTACAGGATCACCTTTAACAGTCTAGTTTTGATATAATCTGATATAAACGGTGTTTAATAATGGTGTTAACTGGTGATGGATGGTGATGTTAATCAGTTGTGCAAAAAGGGCAAGACTAAGAACGTGATTTCATAAATTTATCTCCAAAAATAAAAGTGAGCTTTAAGTTCTGTTCGTTTGCGTTCCTGGCGGTGCTTGTGACGTGTCTCGTACTGCAGGTACTGGTTTAGAAATGCGTCTCCTTCTCTGTGATGGTGGAGATCTTGCCGTCCGCCCTCATTTTGGCATCAGCGTCGTTGACGGCGTACGGACTCTTGGCCCCGAGCTGCCCTCTCATCCTCAGGTCGGCGGCCGGGGTGGTGAGCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257069 lncRNA downstream 32971 13979916 ~ 14008260 (-) True G189624
TU257034 lncRNA downstream 97832 13941186 ~ 13943399 (-) True G189600
TU256927 lncRNA downstream 494332 13546530 ~ 13546899 (-) True G189522
TU256895 lncRNA downstream 555673 13472625 ~ 13485558 (-) True G189509
TU256868 lncRNA downstream 584804 13454693 ~ 13456427 (-) False G189494
TU257086 lncRNA upstream 19 14044745 ~ 14108618 (-) False G189638
TU257085 lncRNA upstream 61098 14105824 ~ 14108618 (-) False G189638
TU257084 lncRNA upstream 62923 14107649 ~ 14108618 (-) True G189638
TU257097 lncRNA upstream 68458 14113184 ~ 14113481 (-) True G189649
TU257105 lncRNA upstream 69478 14114204 ~ 14171621 (-) True G189652
XM_007239754.3 mRNA downstream 468620 13557022 ~ 13572611 (-) True LOC103026383
XM_007239755.3 mRNA downstream 507609 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA downstream 507610 13493576 ~ 13533621 (-) False gdf11
XM_022682831.1 mRNA downstream 575826 13459735 ~ 13465405 (-) True LOC111195441
XM_007229643.3 mRNA downstream 645336 13384925 ~ 13395895 (-) True LOC103033524
XM_022682832.1 mRNA upstream 206738 14251464 ~ 14255472 (-) True LOC111195442
XM_015605609.2 mRNA upstream 504420 14549146 ~ 14609624 (-) True vgll4
XM_007248302.3 mRNA upstream 504420 14549146 ~ 14587297 (-) False vgll4
XM_007248303.3 mRNA upstream 566225 14610951 ~ 14621412 (-) True tamm41
XM_007248305.3 mRNA upstream 580096 14624822 ~ 14638350 (-) False prph
XR_002651608.1 other downstream 964715 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 1421665 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 1695849 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1996938 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3049837 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 1273918 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 1386941 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 2358065 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2789124 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3143939 17188665 ~ 17193747 (-) False irf6

Expression Profile