G76517


Basic Information

Item Value
gene id G76517
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13209832 ~ 13211710 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87297
CAGACATGTTACTTTCTTGTTCAGATGACATTTTCTGGTGAAAATTCTTACTTTGGTCATACTTCAAGACTACAATCTGTGATTCTGAAGTACAGTATCCACACCGTTGTGGGGACTGACAGCAAACATTAGATTCATCCGTGCTGAGGAATCGTGCCGATGCACAACCCACGTAAAGATGATAAATCTGCAAATAACTGCAATTCCACGTTTCAAACAGAGATGGCGACAAAGAGGCAGAACTTAAGGACTGCAGCTTTAAGTAACTTTGCAAGTACGTCAATTTATTCTACTAACCCTAACCCTACCAGTCTACTAATACTCAACTAATAATCTAATGAGAGTGTATTTTTTTTAAGTCATGTGCCCTCATAATCTTTAATCAAAATGACGTGTTTGCTGGAGTGAGGGCAACCTGTTACTCACATGAGATCACAGCAATAGCAAACAACATTGATCCAATGATCCAATCAATTCCTGATGGACAAAAATCAAGTCCCGCCCTGCATTTTTTCCTTGTTAGAGAAGCCGTTACACTCAGATATACGTCACAACAGGAAAAAAAAGACTATCGCAACTTCCGTTTCATGCCAACTTTCAAATTATTTGCATTTTCTGACAAAATCAGTATATCATTTCAATGATATACAAAATCAGTATATCATTTATACTCCATTACAGCACAGCACATGCAACTGCCTTTGAGATGCTAATAGATTGATTTGCACAGTTATTGTTGACCTCCTTGATACAACCATCATTTTCCACAAAGATCTCACTCAAAATTTTAATTAATCACTCATTGTCTTGTTTTTAAATGTCCTTGAATCACTGCAGTACAATTAACTTCCTAAAAAGCTGTAATTTGTGAAGAATTAAACAGCTGAAGAGATGGGTGAGTGGTAAAATGATTACAAGAAAACAGGTGAAAACAACAAGGCTCACTGCACTCTGAATTCACAAACAGGCGCTAGGCACTCTGGGAATGTGGCCCCTGGCTCACACAGTTATAAGCTCAGCATGAGAATGGCTCTGTGCAATACGTCTGCCAAAAGAGCACCAATAATGCTGGAATCCATTATATTCCTATAATACTAATCAGTCTAACACCAAAACTAAACAGAAGCTATGCAAACATGGCTGCATTTTCCAGGTGCTATGCTCAGGAGGGACTACCGGAGTGTGATTTTCACTAGAGGAGACAGGATAAGCCACAAATGCATGTCTTCCTAAAGCATATGGAGTGTTTATTAAATGAAGAGGAAAGTTCTCTATAATGAGAAGAGTGGGACTACAGCTAATTGAGATTCATTAAAAACTAAAGGATAATTACATTGTGTCTAGCATGCTGAATTGAATATTTCATTATCACACGATCAAGAGTGCTGTGGTTTCGAAGCACAGCTGTGATTCGGCCGTGGGTCGCGGTGATTCAGACCGACAGAATGATTGTGAGTGTAATATTTTAACAACAATTCAATATTGTTGATGATAATATTGAGTAACTCACATTTTACACACAATATTGCCAGTTACTTTGTCTATTCTTGCTGCGACAACTAAAATAGTTACACATGAAGTCAAAGCAGTGCTTGAACTAATCATTTGAGTGACTGATTCAATGAAGCACTTAAATGACAGTCTGTCTACCTGGAACATACAAACATGGACAAGTGGAGTGCTTCAAAGTCCCAGGGCTGTTGGGATGTTTATTAGCCCTCTTGGAATGCCGCTCAGTAAATCAAATTCGAGGAACCAAGTACTATAACTATAAAGTTTTAATAATCGTTCTAATTCTTTGAGACTCTATAATGATAATGACACCGATGAACAATATCATTGGAATCACTTTCAGAGCGATTTTTCTAGCTGATGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87297 True 1879 lncRNA 0.38 1 13209832 13211710

Neighbor

gene id symbol gene type direction distance location
CI01000012_13102619_13168566 PRIM2 coding upstream 41266 13102619 ~ 13168566 (+)
CI01000012_13063943_13081607 NA coding upstream 127265 13062843 ~ 13082567 (+)
CI01000012_13029637_13033226 RGS17 coding upstream 176107 13029435 ~ 13038899 (+)
CI01000012_12930929_12947409 PHACTR2 coding upstream 262423 12930929 ~ 12947409 (+)
CI01000012_12892163_12901139 COG2 coding upstream 308117 12892163 ~ 12901715 (+)
CI01000012_13291350_13311094 NA coding downstream 79640 13291350 ~ 13312156 (+)
CI01000012_13391082_13401374 KIF1BP coding downstream 179372 13391082 ~ 13401692 (+)
CI01000012_13404454_13437477 HKDC1 coding downstream 192744 13404454 ~ 13437722 (+)
CI01000012_13442338_13442897 NA coding downstream 229143 13440853 ~ 13443219 (+)
CI01000012_13445338_13452629 HK2, HKI, HK1, HK1.L coding downstream 233145 13444855 ~ 13452629 (+)
G76516 NA non-coding upstream 192 13209299 ~ 13209640 (+)
G76514 NA non-coding upstream 1234 13208349 ~ 13208598 (+)
G76513 NA non-coding upstream 1643 13206245 ~ 13208189 (+)
G76511 NA non-coding upstream 5045 13204341 ~ 13204787 (+)
G76506 NA non-coding upstream 14288 13195320 ~ 13195544 (+)
G76518 NA non-coding downstream 630 13212340 ~ 13212569 (+)
G76519 NA non-coding downstream 5225 13216935 ~ 13217159 (+)
G76565 NA non-coding downstream 160370 13372080 ~ 13372544 (+)
G76566 NA non-coding downstream 174726 13386436 ~ 13386644 (+)
G76567 NA non-coding downstream 175338 13387048 ~ 13387378 (+)
G76374 NA other upstream 460663 12745531 ~ 12749169 (+)
G76385 NA other upstream 534166 12630755 ~ 12675666 (+)
G75533 NA other upstream 2064093 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2985545 10223697 ~ 10236276 (+)
G76645 NA other downstream 440149 13651859 ~ 13652234 (+)
G76656 NA other downstream 491777 13703487 ~ 13739731 (+)

Expression


Co-expression Network