Gene
RNA
| Item | Value |
|---|---|
| gene id | G87490 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000015 |
| NCBI id | null |
| chromosome length | 8631711 |
| location | 1726306 ~ 1728618 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU99621 | True | 1424 | lncRNA | 0.46 | 2 | 1726306 | 1728618 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000015_01688642_01691631 | NA | coding | upstream | 34365 | 1688642 ~ 1691941 (+) |
| CI01000015_01638133_01646368 | HYKK.2, HYKK | coding | upstream | 79897 | 1635426 ~ 1646409 (+) |
| CI01000015_01580548_01582805 | TCTEX1D2 | coding | upstream | 143228 | 1580548 ~ 1583078 (+) |
| CI01000015_01412031_01434518 | RUBCN | coding | upstream | 291788 | 1412031 ~ 1434518 (+) |
| CI01000015_01405454_01407722 | NA | coding | upstream | 317571 | 1404981 ~ 1409173 (+) |
| CI01000015_02012379_02029276 | EPHB3 | coding | downstream | 283761 | 2012379 ~ 2029701 (+) |
| CI01000015_02268895_02277023 | NA | coding | downstream | 539997 | 2268615 ~ 2277083 (+) |
| CI01000015_02366085_02370003 | NA | coding | downstream | 637096 | 2365714 ~ 2370475 (+) |
| CI01000015_02419171_02421041 | NA | coding | downstream | 690366 | 2418984 ~ 2421794 (+) |
| CI01000015_02428969_02441818 | NA | coding | downstream | 700351 | 2428969 ~ 2442423 (+) |
| G87496 | NA | non-coding | upstream | 1042 | 1725033 ~ 1725264 (+) |
| G87487 | NA | non-coding | upstream | 16121 | 1709973 ~ 1710185 (+) |
| G87468 | NA | non-coding | upstream | 53845 | 1672238 ~ 1672461 (+) |
| G87459 | NA | non-coding | upstream | 61718 | 1664369 ~ 1664588 (+) |
| G87442 | NA | non-coding | upstream | 78137 | 1646660 ~ 1648169 (+) |
| G87501 | NA | non-coding | downstream | 12253 | 1740871 ~ 1741085 (+) |
| G87989 | NA | non-coding | downstream | 175269 | 1903887 ~ 1904207 (+) |
| G88005 | NA | non-coding | downstream | 258417 | 1987035 ~ 2039591 (+) |
| G88031 | NA | non-coding | downstream | 319922 | 2048540 ~ 2048767 (+) |
| G88209 | NA | non-coding | downstream | 512185 | 2240803 ~ 2241072 (+) |
| G87432 | NA | other | upstream | 114919 | 1611083 ~ 1611387 (+) |
| G87972 | NA | other | downstream | 147386 | 1876004 ~ 1876594 (+) |
| G88172 | NA | other | downstream | 655398 | 2384016 ~ 2526510 (+) |
| CI01000015_02512276_02523824 | NA | other | downstream | 783480 | 2511546 ~ 2524572 (+) |
| CI01000015_03011472_03026518 | NA | other | downstream | 1294378 | 3011472 ~ 3026636 (+) |
| G89822 | NA | other | downstream | 2563228 | 4291846 ~ 4314351 (+) |
