CI01000018_04041639_04049792


Basic Information

Item Value
gene id CI01000018_04041639_04049792
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4040830 ~ 4049792 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04041639_04049792.mRNA
TGGAGAGGACAGCTGACTTCCCCTCTGTTGAGTTCTTTCTGCTGGAGGATGCAGTGCTACACTTTACTCGTTTAATGGACAGGCTGAACGAACAGCATCTCTACCAGCCTCACCTGTGCGACGTGGACCTCGTGCTGGTGTCCCACTGTACATTTTCCGCCCACAAGTACGTGCTGAGTGTACACAGCCCAAACTTCCAGGCCCTCCTCTCTCAGAGTCAACCGCTGCACCAAATAAACCTGGCCTTTGAGGTGCTGAGTATCCAGATCCTCAACTTCATCTATATCTCCATCTTTGAAGTGCTACAGGTGGCCATTGTGCTCCAGATGAGTGATTTCTGCCACAAGCTACCTGGCTCCAATGAGATGGCTGACACAGACGAGCAGGGCAATGCCTCGTCCAATCAGATGTACAAGATGAAGGAGATTGAGAAGATGTACACACAGCAAGGAAATGGTACTTTCTCATTGCTTGTAGAGGATAGTGGGGTCAGTAGGGAAATTATCCAGACACATTCATCTAGCGTCCACTCCAGCCCTCAGGCCAAACATTTCTACAAAAATGATGACAGCAGAGGGGGAGTGGCTAGTGGAGGAGGGCGGGGCTTATGCAAAATAGAGGGAGGGGCCAGTTTCAATGAAGCGGGAGCCCAGGATGGTTCTGTCTCTTTTAACAGAGAGCAGATTATCGTGGAGGTCAATCTCAACAACCAGACATTGAATGTTTCTAAAGGGTCCGACGGCAAGAGCATCACCTCAAGTACCTCATCCCTCCTCGTTCACCATCGCACCAGTCCTTCCGGTGTGGAGGAGGGGAAGGAACGGGGCGATAATGAAGATGTTGGTGAAGACGAAGAAGAAGAATATGAACAAGGAAAGGACGAGATGGAAAATTGCAGCGATGATGAGGACGATGAGGATGAGGAAGAGAACAACCTCAACATTCCAGAAACGGGACACACCAGCGTGGGAAGACTGCGTGCCACGAGAATACCAACTGGCACAGATGCCGCCATGAGACAGACATTAATCGACGCCACACTAGGGGAAGGGAGGAAGAGGAGAAAAGAGCAGGAGAGTCTGGGGCAGAAGGTGAAGCTCGAAGAAAAGCAGCACTTTTCCTGCAAGAAGTGCCCTCGTATTTTTAACAACCGCTGGTACTTGGAGAAGCACATGAACGTCACACACAACCGTATGCAGATCTGCAATAAATGCGGCAAGCGCTTTTTACTGGAGAGCGAGTTGCTGCTACACCATCAGACAAACTGTGAGAAAAACATACAGTGCGTGACTTGTGGAAAAGCCTTTAAAAAGCTGTGGTCTTTACACGAACACAACAAGATTGTCCACGGATATGCCGAGAAGAAGTTCTCTTGTGAAATCTGTGAAAAGAAATTCTACACCATGGCACATGTCCGGAAACACATGGTTGGAGAGAAACCATATATCTGTGAGATCTGTGGAAAGAGCTTCACGAGCCGGCCCAATATGAAACGGCACCGCCGCACTCACACTGGCGAGAAACCATACCCCTGTGACGTCTGCGGACAGCGTTTCCGCTTCTCCAACATGCTCAAAGCTCACAAAGAGAAGTGCTTCCAGGTCAGCAACCCCATGGTATCTGATACCACCAACCTTCTGGGCCTGGAGCCCACGTCAACTGATATGGACACACCAGCCAATCAGTTACCCAGCCACCCTATGACCCCTCCTGGAGAGGCATCCAGTCTCCACCAGGTCAAGTCGCTCTCGCTTCCCTTCGTTCACTCTATCGTAGGTCATCCCTCTCCCCCGACCCTGTTTTCCACTGAAAGGGTGAACTCCGGTAACAACTAGTTTTGATTTTAAGGTTCCTTTGATTGTTTAATGTCTGAAACCCAAAGCTTGCAGTAGCTTCCCTTGAGCTTTTTGATTCACATCCAATGTGAATCACTCTCATAGGGGTTTCCAAACATGCTGAGCGAGGTCTAAAAGACTTCCGGCAGGTGTTTGAACAGTGTGCGACACTGAATATTCCTTTTAAACTGTGCAAATTTTCACTTATCTTATTCTCATAGAGATATTTTATATACTGTTCAAATAAGCTTCTCGTATAACAGAAAGAAAACAAATGTTCTCATTATTTTTGTTGATGTTTTTGATGCAGTTTTTGTGAGCTACAGGATTAGCAGTTAGCACTGCATTTCTGCATTTCACATGCTCTTGATATGGTCACCGTGGTTTTGCCAAGTAGACATGTTCTTGGATCAACATATTTTGAAAATTTAGTCCTAACCCTATCTCTACCCCGAAACCTAACCTCACCCATAACCTATCCCTAAAATCAGAGGGAAAAGATAGGTAAATAACACTGATGTAAAAGCACCTAACCCTGGTTGTAAGCCTAAACTTGACATAAACTGTAAACTTGTCCCTCAAATCTGATTGGTTGATTGGAACGTTGTACCAGGATCAACAAAGATGTTGATCCAGGAACATGTACTTGGTAAAATCACGTTCACCCTTTTACTATAGTTGTTCATGCTTTGTCGATTTCATCTAACTAGTGGAGATTCCCATTAGCTGCATTACAAAATACAAATACGTATTGAACTCACAGCAGAGGGCGCTGTGGGACGTGAGCAAATAGCTCTTTAGCCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04041639_04049792.mRNA True 2644 mRNA 0.46 3 4040830 4049792

Neighbor

gene id symbol gene type direction distance location
CI01000018_03991163_03994220 NA coding downstream 46592 3990550 ~ 3994238 (-)
CI01000018_03965992_03984331 NA coding downstream 55311 3965939 ~ 3985519 (-)
CI01000018_03942344_03955439 VILL coding downstream 85391 3942087 ~ 3955439 (-)
CI01000018_03888251_03907553 DLEC1 coding downstream 131655 3887539 ~ 3909175 (-)
CI01000018_03814990_03841716 MAP3K20 coding downstream 199114 3814791 ~ 3841716 (-)
CI01000018_04075425_04081550 NKTR coding upstream 25613 4075405 ~ 4081550 (-)
CI01000018_04118240_04160401 VIPR1B, VIPR1 coding upstream 68195 4117987 ~ 4160401 (-)
CI01000018_04221457_04229417 NA coding upstream 171444 4221236 ~ 4229417 (-)
CI01000018_04231186_04233076 NA coding upstream 181127 4230919 ~ 4233076 (-)
CI01000018_04239141_04241413 CCDC58 coding upstream 188461 4238253 ~ 4241413 (-)
G104963 NA non-coding downstream 228284 3811411 ~ 3812546 (-)
G105090 NA non-coding downstream 336931 3703444 ~ 3703899 (-)
G105084 NA non-coding downstream 349472 3691083 ~ 3691358 (-)
G105079 NA non-coding downstream 359319 3681192 ~ 3681511 (-)
G105077 NA non-coding downstream 360849 3679304 ~ 3679981 (-)
G105115 NA non-coding upstream 34751 4084543 ~ 4085146 (-)
G105140 NA non-coding upstream 36734 4086526 ~ 4086789 (-)
G105142 NA non-coding upstream 37352 4087144 ~ 4087354 (-)
G105141 NA non-coding upstream 39598 4089390 ~ 4092340 (-)
G105146 NA non-coding upstream 46540 4096332 ~ 4096565 (-)
G105104 NA other downstream 23013 4007697 ~ 4017817 (-)
G104968 NA other downstream 540316 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1639927 2389201 ~ 2488018 (-)
G103842 NA other downstream 2080772 1959497 ~ 1960058 (-)
G105200 NA other upstream 193675 4243467 ~ 4246010 (-)
CI01000018_04856240_04875704 DAP other upstream 805289 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1841544 6020861 ~ 6025876 (-)
G106538 NA other upstream 2480655 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2590820 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023408 zbtb47b coding NC_007135.7 CM002908.2 20589458 ~ 20641000 (-)