G102745


Basic Information

Item Value
gene id G102745
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 1177806 ~ 1178439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU116895
AGAATTTTCATTTTTGGGTGAACTAACCCTTTAAAGTCAACATGAAACGTAAGTTGCGATAGACTTTTCTTTCCCATTATAACGTATATCTGAGTGAAACAGCTTCTCAAACAAGAAAAAATGTAGGGCAAGACTTTGTCCTTTAGGAGTTAATTGGATCGTTGCGGTTTGTTATTGCTGTAATGTGAGTGACAGGTTGTGCCATCCTCGTGCCAGTGAACACGATGCCGCTGCAAGAGAATTGCTGTCAATTGACAAGTTTGATTTCATGGTGACTTTAATGCAGTGGTTCTCAACTGGTGGGTCGCAACCCAAAAATGAGTCGCAGGTTTGTTCTGATGGGAAAACAACTAAGCATATAATTGTGCATATTTAGGGAAGCCAAATAAATATGCGTATCAAAAAAACGCAAACACATTTTTATGCTTTTAGCACAGTCAAAAAATTACATACAGCACCTAAGTACAGCTCATTTCTGCTTGAATGGGGAAAGAGTGAAATCTCCAAAACTGATTTCTGATGGTGATTGGCACTTTCCATTGTCCTCCCCCTACAGTGTCTGTTATAATGGCCTTGTATAATGTATGCATATGGTTGTACAAATTATTTGTTTTCTACCTCACATTGTTTAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU116895 True 634 lncRNA 0.38 1 1177806 1178439

Neighbor

gene id symbol gene type direction distance location
CI01000018_01162096_01176494 CRISPLD1A coding upstream 1066 1162096 ~ 1176740 (+)
CI01000018_01130413_01157978 PI15A, PI15 coding upstream 19807 1129786 ~ 1157999 (+)
CI01000018_01117105_01119896 NA coding upstream 57662 1116757 ~ 1120144 (+)
CI01000018_01077933_01082094 GDAP1 coding upstream 95252 1077933 ~ 1082554 (+)
CI01000018_01005482_01007949 NA coding upstream 169651 1005043 ~ 1008155 (+)
CI01000018_01237799_01262508 DOK6 coding downstream 59360 1237799 ~ 1262508 (+)
CI01000018_01378078_01379655 SOCS6 coding downstream 199128 1377567 ~ 1379678 (+)
CI01000018_01588236_01598892 NA coding downstream 409594 1588033 ~ 1599250 (+)
CI01000018_01709643_01800520 NETO1, NETO1L coding downstream 531204 1709643 ~ 1800520 (+)
CI01000018_01815173_01819759 NA coding downstream 636734 1815173 ~ 1820017 (+)
G102746 NA non-coding upstream 90 1177412 ~ 1177716 (+)
G102748 NA non-coding upstream 564 1176926 ~ 1177242 (+)
G102729 NA non-coding upstream 18509 1080024 ~ 1159297 (+)
G102724 NA non-coding upstream 105245 1072303 ~ 1072561 (+)
G102719 NA non-coding upstream 116793 1060169 ~ 1061013 (+)
G102766 NA non-coding downstream 17311 1195750 ~ 1196065 (+)
G102772 NA non-coding downstream 105612 1284051 ~ 1284200 (+)
G102847 NA non-coding downstream 187259 1365698 ~ 1366006 (+)
G102792 NA non-coding downstream 206500 1384939 ~ 1385266 (+)
G102856 NA non-coding downstream 213647 1392086 ~ 1392438 (+)
G102895 NA other downstream 404474 1582913 ~ 1585662 (+)
CI01000018_01924489_01985310 SEMA5A other downstream 790813 1924489 ~ 1985311 (+)
G104258 NA other downstream 2512650 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 3191747 4368179 ~ 4375866 (+)
G104670 NA other downstream 3577362 4755801 ~ 4759768 (+)

Expression


Co-expression Network