CI01000018_01378078_01379655 (SOCS6)


Basic Information

Item Value
gene id CI01000018_01378078_01379655
gene name SOCS6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 1377567 ~ 1379678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_01378078_01379655.mRNA
GGATATAATGCACTTTTCAGCTGAATTCATCAAAATTTTTGAGCATTGCGGAAATAAATGCATATTTTCTGAATGTCAAACTCAAAGTTTACCTTTGTATTATTTTCCCAATTATTATTGTCCAAAAATACTTTTGTATTATTAGACAGAACTGTTAAAGACTTGAGAATGGGTGCTTATGTATCTGCATTTTGGTGCTGGATTCTCAGCGCTGCCAAAATAAAAGTCCCACTCTCTACACTTATCGGCCAAACGGAAAAAATGCCATGTATAGGTCAACCACAATCACAGATGACTTGAAATGTCATGATGAATCAAAAAGAGTGAGAACTCTGCATATTTAGTGGTTAGTTCACTTTTTCATGATGTCTTTTATCTCACCTTTTGCAGATGACGAAGACTTTGGCGTTCACATGATTGACGTTCCCAAGTCACATGGCCGGACTCTGCGGTTAGCATTCATCGGTCAGCAGATAGGACCGTCCCATGCCCTCACCTGGGGTGTACAAGGATGAAGAAGATCAGTCTGAAGACGATCAGAAAGTCACTGAACATAAAGGGCAAAGAAGATGGGGATTTTGTCATGCTTCAGCAGCCATCTTTAGCGGCTGAGTTCACCAAGGATGACTCTCTCTTTGGAGGCTGTTACACCAATGGGCTGGTAGGTTGTGATCTTAATGGGGAGGATGAGAAGGGTCATAAGAACCGATCGAAGAGCGAGAGTCTTATGGGCACTCTAAAGAGGAGACTGTCTACCAAACAGAAAGCGAAAGTCAAAGGAGGGTCCGCTGCAGTAGGCTCTGGAGATGATGATGACACTTTCTCTTCCTCGTCGGTCCCGATAAGCTTTAATGAAGTCAAAGCCCAGCGGCCCTTAAGATCCTCATCCCTCCGAAGCCATCATTACAGCCCTTCTCCGTGGCCTTTCCGGCCCGTCAGCTCCGAGGAGGCTTGCATCAAGATGGAGGTGAAGGTCAAAGCTATGGTCCACTCCCCCAACCCCAGTCCCTCCCTCAATGGCATCAGAAAAGAGTTCCATGACATCCAATTAGAAGGTCTGTTCCAGGATCAGAGCGAGTCTCTGAAGGACATGGAGACTCAAAGTGGCAACTTGCATTTGAACATTGAGGATCACGTGCCTATTGGACTTACACCTCAGGACTACATCCAGTACACAATGCCTTTAGATGAGGGAATGTACCCAGATTCGTCCCAGTCCTTCTGCTTAGATGGCCCCTCACCAATGGAAGTGGTTGATCAGGTTGAATCTGATTCGCTGCACGTGGACCAGGGCCCAGATGACCACGATCTCATGCCGCCGGAAATTCTCATGGAGCAGGCGGTGAACGGACACCTTCCCGGTACTCCGGCGATGGTCCTTTCCAATTCCAGAGCTGACACACCTTTATTTTCTCCTTCACTATCACCTCTTTCCACCAACGATATTCCAAGGACCCTCTCCGGGTTCAGTGGTGCAGACTCTCATGTTGTCGAGAGAGTAAGGCATCACCTGAACTTTGACCCCAATTCCGCTCCCGGTGTTAGCAGGGTGTACGATTCTTTTCAAACCAGCGGACCCATGGTTGTAACAAGCCTTACGGAGGAACTTAAAAAACTGGCCAAGCAGGGTTGGTACTGGGGACCTATAACGCGATGGGAGGCAGAGGAGAAGCTCATCAACCTTCCAGATGGTTCTTTTTTGGTGAGGGACAGTTCAGACGATCGCTATCTCCTCAGCTTGAGCTTTCGGTCACAGGGAAAGACGCTTCACACCAGGATCGAACACTCGAATGGCAGATTTAGCTTTTACGAGCAGCCCGACATAGAAGGTCACACTTCCATTGTAGATCTCATCGAGCACTCTATAAAAGACTCAGAAAATGGCGCGTTCTGTTACTCCAGATCCCGCCTGCCGGGGTCCGCCACGTACCCAGTTCGGTTGACCAATCCCGTTTCGCGGTTCATGCAAGTCCGTTCGCTGCAATATCTTTGCCGCTTCGTCATCCGACAGTACACACGGATAGATCTGATTCAGAAACTGCCTTTACCAAACAAAATGAAAGATTATTTGCAGGAGAAGCACTACTGAACGGACTGTAGTGGGATATGGTA

Function

symbol description
socs6 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Acts upstream of or within proteasomal protein catabolic process. Located in immunological synapse.

GO: NA

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_01378078_01379655.mRNA True 2112 mRNA 0.47 1 1377567 1379678

Neighbor

gene id symbol gene type direction distance location
CI01000018_01237799_01262508 DOK6 coding upstream 115059 1237799 ~ 1262508 (+)
CI01000018_01162096_01176494 CRISPLD1A coding upstream 200827 1162096 ~ 1176740 (+)
CI01000018_01130413_01157978 PI15A, PI15 coding upstream 219568 1129786 ~ 1157999 (+)
CI01000018_01117105_01119896 NA coding upstream 257423 1116757 ~ 1120144 (+)
CI01000018_01077933_01082094 GDAP1 coding upstream 295013 1077933 ~ 1082554 (+)
CI01000018_01588236_01598892 NA coding downstream 208355 1588033 ~ 1599250 (+)
CI01000018_01709643_01800520 NETO1, NETO1L coding downstream 329965 1709643 ~ 1800520 (+)
CI01000018_01815173_01819759 NA coding downstream 435495 1815173 ~ 1820017 (+)
CI01000018_01821013_01821973 NA coding downstream 440700 1820378 ~ 1822344 (+)
CI01000018_01900038_01904335 NA coding downstream 520360 1900038 ~ 1904406 (+)
G102847 NA non-coding upstream 11561 1365698 ~ 1366006 (+)
G102772 NA non-coding upstream 93367 1284051 ~ 1284200 (+)
G102766 NA non-coding upstream 181502 1195750 ~ 1196065 (+)
G102745 NA non-coding upstream 199128 1177806 ~ 1178439 (+)
G102746 NA non-coding upstream 199851 1177412 ~ 1177716 (+)
G102792 NA non-coding downstream 5261 1384939 ~ 1385266 (+)
G102856 NA non-coding downstream 12408 1392086 ~ 1392438 (+)
G102873 NA non-coding downstream 42671 1422349 ~ 1422584 (+)
G102877 NA non-coding downstream 47873 1427551 ~ 1427759 (+)
G102881 NA non-coding downstream 73982 1453660 ~ 1453976 (+)
G102895 NA other downstream 203235 1582913 ~ 1585662 (+)
CI01000018_01924489_01985310 SEMA5A other downstream 589574 1924489 ~ 1985311 (+)
G104258 NA other downstream 2311411 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 2990508 4368179 ~ 4375866 (+)
G104670 NA other downstream 3376123 4755801 ~ 4759768 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022852 socs6a coding NC_007135.7 CM002908.2 15277216 ~ 15278775 (+)