CI01000019_00699257_00717659 (SLCO1F4, SLCO1F3, SLCO1F2)


Basic Information

Item Value
gene id CI01000019_00699257_00717659
gene name SLCO1F4, SLCO1F3, SLCO1F2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 699212 ~ 717691 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_00699257_00717659.mRNA
GTATAAAAGCCACATTTAGTACATTGTTAGTGCTCAGTAGAAAGAATGTCTCAGAAGTACAAGAAGTTCAGTTTGATCTTTATTGGCGTACTTGCCTTCTGTTATTTCTCCAAATCCCTGACGGGGGCTTACACCAAAAGCACCATCACTCAGATTGAGAGGCGGTTTGAGATCCCAAGTTCTACTGTTGGTATCATCGATGGCAGTTTTGAAATGGGTAATCTGTTGGTCATTACTGTGGTAAGCTACTTTGGCGCTAAGTTTCACAGGCCCAAGATCATTGGAGCAGGGGTCCTGCTGATGGGAATAGGGACACTGTTAATGGCTTTACCTCACTTCATTATGGGCCGGTACAAGTATGAGACAGCTGCCACCCACACTAATGATGCTGATAACTTCACAGTGATATCTACATGCTCATCTGACACCCAGAATACTGTTCAACAGCTTGTTTCTGGGTGCCAAAAAGGGGAAGAGGAAAGCTCGCCCACATGGGTGATTGTGCTGTTGGGAAACATTATTCGTGGCATCGGGGAAGCCAGCATCGGCCCTTTGGGAATGTCATTCATAGATGATTATGCGCTCCCAGAAAACTCTGCTTTTTACATAGGTTGCCTGCAAACACTCGGAGTGATCGGGCCAATTTTCGGTTACACGCTTGGATCTTTGTGTGCTAGTCTTTATGTGGACATTGGCTTGGTGAATCAAGCCAGCAGAGCAGGATGCTCAGGAAAGGCCAGTGGAGCAAGTGACCCAGGAGTGGAAGACCACAGAAGAGCCAACGGATTAGGAGACTTAAGAAGATTTGGTCATGTCAAAGATGAGGCAAAGCTGATGGAACAAGGAAACCCACCATATGGAGCCAGCAGTGTGGGTGGGGCCACAGGGATCTCCGATGCTGCAGCGGATGCCACTGCTTCAGGGGATGCTTTGGTAGACAACACACACAGTTTGATGGTGAACCCAAGTGCAGGATCTTTTTTTAGGTTATGGACAGTGAACAGAGCTCTACCTGAAAACCACCAAACCTCTGAGCAAGACCACCACTCAAACCAACACAAACACACACCCAGCATTACAGAGATAGCTAAAGATTTTGGGCCATCTCTGAAGCGTCTGCTCACCAACAAGATCTATCTCCTGTACCTGGTTTCCAATGTAGTAGCATTCAACGCCTTTGCCATATTCATAACATATACGCCAAAGTATTTGGAACAGCAGTTTGGACAAAGTGCAACCAAGACCAACTTTCTCATAGGACTGACGTCTATTCCACCAGTGGCTCTGGGTATGTTCCTGAGTGGGTGGATAATGAAGAGGTTTAAACTGGATCTGCTAGGATCTGCAAGAATGTCATTTTTCACTGCTATTTCTGCACTGTTTCTTACCATCCCTTACTTTGCACTTAGCTGTGAAAATATAGATGTCGCTGGGGTCACAGTGCCCTATCAAGGGCTGCAATTCCACTCGTGGCACAGGATGGAATATGGTGGTATTCCTGCTCCCATTTACTTTGGTGCTCTTATTGACTCTACCTGTGTGAAATGGGGTTACAAGAAATGTGGTGGAAGAGGTGCTTGCAGAATCTATGACACTGAGACTTTTAGGTTCCTGTTTCTGGGACTGGTTAGCTGTCTGCAGGTATTAAGCTATACCCTGTTATGGGTGGCCATCACACAGATTACCAGGAAAGTACAGAATGGTAAACAGGGAGCCAGGACTCTGGGCGAGGACCCCCAACATACGCAACCTGCCTTTGACGCATCAGAGAACCAGACCTCCGGGCAGGGACCCCCACCCAGGCCCGACCCCCTGCGCCCGCACACAGGGAACCAGGACTCCGGGCAAGGACCCCACACCATGGGGGGTGGCCTCGCGTTTGTGTTGTCCCCAAAGCGCATCGCACGATGCCCAGGGCGGGGCATCCGGATTCGGCCTTGTTCGCAACAGCGGCCCTCTCAATCCAGAGGGCCTCGGGGAAGAGGGAGGCATCGCCAAGCCTCCCCCTTCATACAACCCAGATGGGCTCATTTCGATGGTTCCGCGCTGCAACGCCACCTCCAGACCGCGGCCAAATCTGACGCTGCCCGGGAACAGGCCTGCGGGGAACGGAAATTTTTCAAGGGTGGTGGTACCCGAGGGGGGCGAGAGGGACACCCCCGGAGGGGGTCTTCTTCTTCCACCACTGCGGCAGAATCTGCTCCATGCCCACGATGGAGCATCCTTTCCGGCCTTGGGAGCCCCTGGGAGTTCCCTAAACTCCCAGACATCCACCACCGTGGCGGAATCTGCTCCATGCCCACGATGGGACATCCTTTCCGGCCTTGTTACACCCCACAAGCCCCTGGAGGAGGCATTGGAAGGATTGGATTGCCGAGCCTGCAAGGAATTGCCAATCAAGATCCTTTGTGCGAGGCTGGCCGTTGTTCGCAGTGGTGGCCCGCTGGCTCCTGCATCTCCTCCGCCCGCCGCCTTCGAGCCAGCAGATTGCAGGTTACTCCTTCAGGAGGCTCTACCGAGGGGCTGACGTCGGCCCAACCCCCACGTCGCCCTCAAACACCGGAGCTCCCGCTTATCTATATTAAAGAGAGTTCCCGCCCTCCACCAGAAGCGCGGGAAATGGTCTCATTTGGCTATGAAGAGGATGACGTCATGTCTACGAATGCCTCTGACCCGGGTGCCTGGTCAAGGTTCATATCGTCATCAGCTCAGCGTTCGGCTGGATATGCTGGTCGCACTCCACCCACGAGCGCGGGCTCGCACCGCGCCACTTCATCAGAGGCAATTCAAAAAATCCCACTTCGGAGCGAAGACGGCCCCTCGTCAGCAGGTACAGCCTGCAGAGAAGAAGGAGCAGCGTTCCTGATGTTTGTGACGGGAGGAAAAGGGCGCGGTCCGTGTGCGACAAAGGGCCAGCGGCCAAAAAAGCGCGTTCTCGCTCAGAGTTCACTCTGTGGCCAGAAGAGAACCTCGAGAATGCATGTTTAAATGTTATGTTGAAACCGATGTGTTCTGTTGTA

Function

symbol description
slco1f3 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.
slco1f2 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Acts upstream of or within microcystin transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.
slco1f4 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Acts upstream of or within microcystin transport and response to hormone. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
Zgc:158438

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_00699257_00717659.mRNA True 3020 mRNA 0.52 18 699212 717691

Neighbor

gene id symbol gene type direction distance location
CI01000019_00681252_00695505 NA coding upstream 3626 681043 ~ 695586 (+)
CI01000019_00666293_00680914 NA coding upstream 18298 666252 ~ 680914 (+)
CI01000019_00642751_00656054 SLCO1D1 coding upstream 42545 642751 ~ 656667 (+)
CI01000019_00606223_00619716 NA coding upstream 79496 606028 ~ 619716 (+)
CI01000019_00496576_00497214 NA coding upstream 201597 496576 ~ 497615 (+)
CI01000019_00739862_00741111 IAPP coding downstream 22171 739862 ~ 741200 (+)
CI01000019_00750525_00759434 RYROXD1, PYROXD1 coding downstream 32450 750141 ~ 759844 (+)
CI01000019_00785792_00786324 NA coding downstream 68101 785792 ~ 786398 (+)
CI01000019_00786469_00789270 NA coding downstream 68722 786413 ~ 789650 (+)
CI01000019_00791525_00800217 NA coding downstream 73681 791219 ~ 800416 (+)
G107009 NA non-coding upstream 52786 563746 ~ 646426 (+)
G106963 NA non-coding upstream 195538 503165 ~ 503674 (+)
G106843 NA non-coding upstream 259305 436586 ~ 439907 (+)
G106842 NA non-coding upstream 271094 427086 ~ 428118 (+)
G106849 NA non-coding upstream 282689 415886 ~ 416523 (+)
G107049 NA non-coding downstream 3872 721563 ~ 721803 (+)
G107056 NA non-coding downstream 25711 743402 ~ 743611 (+)
G107061 NA non-coding downstream 30249 747940 ~ 748197 (+)
G107062 NA non-coding downstream 31376 749067 ~ 749367 (+)
G107000 NA non-coding downstream 45150 762841 ~ 763126 (+)
G107312 NA other downstream 911741 1629432 ~ 1629985 (+)
G107310 NA other downstream 983054 1700745 ~ 1706990 (+)
G108050 NA other downstream 1623308 2340999 ~ 2341333 (+)
G108563 NA other downstream 2450657 3168348 ~ 3169195 (+)
G108454 NA other downstream 2494760 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029740 slco1f2 coding NC_007115.7 CM002888.2 77286165 ~ 77304374 (-)