CI01000019_00606223_00619716


Basic Information

Item Value
gene id CI01000019_00606223_00619716
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 606028 ~ 619716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_00606223_00619716.mRNA
ATATAAAAAGCCCTTTGTTAGCTTTTGTGTTCCATACCCCCTTATTAGTTCAGGTGAAAATAGTCAATGTTTAATCTAGTGGCTATTTCCTCATGTTATTCAAATTAAGTGGATCTCATTATAAAAGGGCTGCAAGATGAATTTCTGTAGTCCTGATGCAGTTGTGCACCTGTGAGCAGAGGTTTATTAGATAGCATGGCTCTGCAACAGGCGATATTTTTAGGAATAATTATTGTATTCTCAGGCCACATCTATTCTGTGTTTGCAGCTCAAAATGTGTGTAAGACGTATGGCAGCGGCATCTTTTATACCTTCAACAAAACAGCATTTCATCTGAAGTCCACATGTCCTGTAACGCTCACACGCTTCACTCATGCTGGAGTGGACTGTCATATCATCGTCCAGCGTGGACCGAACGGCATGATGGACAGAGTGGAGATCATCGTGAATAAAATCACGACCCTCGTTCACAATAACACTGTCACAGTGGAAGGCAGCAGAATTTCCCTTCCATACGACCACACCTATCAGTATGTGTTCCATTATGGAGTCTATACCAGGCTCCAAAGCAAAGTTTTGCCATTGTCTGTCACCTGGTACAGTGTCTCTAATGGTGTCAGTTCACTCTGGGTGCAACTGGACCAGGTTTTAGTGGAGGGTATGAGTGGACTTTGTGGGCACCAGAACAGCACAGAAACTATGCAGCAGCTGATAACTGCCAGTGTACTCTCTGATGGGCAATGCCTGACACAAGACTCTGTTGCACAGAAAAACACAGTTTGTAGAGATGTTTTGTCCCATGCTTACGAATGTCTCGGCACTAAATATCAAACCTACATGACTCTATGTTATAAAAATATGAATGGCTTGTGGCATCAGGAAGCAAACTGCTCCTTTTTTAAAGAACTCTCGCTTTTGTGTGGGAGCTCCAATCCAGTGTGGTCAGTATGGAGATCGAAAAGCAACTGCTCCAAACCTCTTTGTCCTGGAGACCTGCACTATGTGGAGATGGGTCCTGCTTTCCCCCCAACCTGCAGCAACCCACAGAATTATACCACAGAATTAACTAGCACCTGCCTGCCTGCTGAAGGAAAGGTCCTGAATGATCATGCTGATGGTTACCATTCCATAAATGTGGAGGAATGTCCATGTGTACATGCGAAAATAATCTATGCACCAGGGCAGGAACGCAGAACAAAGTGCCAGACCTGTACCTGCATCAGAGGCAAATGGGCATGTTCTGCAAACATATGTCCAGCCAAGTGTATTATTGAGGGCCAATTCATCTCTACATTTGATGGCAAACAGTATTCTCTACTAGACAGATGCACATTTGTGGCTGCAAGGGGGCTTAACTGGACATTGAACATTCAGTATTCTGGGCAAGCTGTTGTCATAGAAAAGGCATATCTTAATATTAACCAGGAAAGATATACCTTCTCTGCAAACAGCATACAAATGAACAATATAGAAATCAGTGATCTGTCACAGACTGAGTCAACCACAGTCTTTTGGCAGTCTTCAATGTTCATTCAAGTTCAGACTTCATTTGGCCTGAAAATGCAAATTCAGGTCTCTCCAGAAATTCAAATATATTTGAATTTGCCATCAACCGAAAATACCAAAGGTCTCTGTGGAACTTTTAATAATGACACAAGTGATGACTTCACCACTTTTAGTGGGATCATAGAAAGTTCGGTTCAGCTTTTTGCCCAGTCCTGGTCAATGGGCAGTTGTACCCCAATTACTGGATGCATCAACACTGACAACGAGATATTTGCTGAGGAGAACTGTGACCAACTGAAAGATCCAGAAGGAGTGTTTGCCGTGTGTCATGATTATGTACCTGTTTCGCCCTTTGTCGAGGCTTGTGTAAAGAGAACATGTCAGTGCTCGGCTGCATTACAGGAATGTTTGTGTGTCTCCTTTGGAAACTATGCAAAAGCCTGTGCAACTCAAGGGATCACTGTTGAGGACTGGAGATCAGAAACAAACTGCATTCCTTCATGCATGGGCAACCTGAGGTTTGCTTATGCCACTTTGGCATGTAACCATACCTGCCGTTCCCTCTCGGGCCCTGATGCCACCTGTGAGGTGGTGGATGACCCTGTGGAGGGGTGTGGATGCACGTCAGACTCTCACCTGAGCAATCAACTGACCTGCAGTCCTCGCTCACTGTGCAGCTGTTACCACCCAGGAGGCGTCACACCTCCAGGTCCAGTGGTTATTGGTGGACGCCAATGCTTGTGTGAAAATGGACAACTCCATTGTCCCAAAATTTGCAATTGCACAGTGGGAAAGATTTGTGTGGACTGTTTACAAATACCCGTGAACACGGCCCATAGGACATGTGAAAGCTTGACCAAACCCGTAACTGATGATAGTAGCTGTGTCAGTGGCTGTTATTGTCCGGGGGGGCTTTTTGAAGATCACAATGGTGGTTGTGTGACTCATGAAAACTGCACCTGTGAATTCAGTGGGAGGGTGTATGAAACTGGGCAGAGTGTGGAGACAAACTGTAAAATATGCACATGTAGAGGTGGTGAGTGGTTTTGTGTTGATGAGGCATGTTCAGGAGTATGTGAGGTTTTCGGGAATGGGCAATACCACACTTTTGACTCCAAATGGTACAAATTCGATGGCCACTGTCAGTACACCCTAGTGAAGGACGCAGGTTCAAGTGGACAGTTTGCAATTAAAACTGAGAGTGTTCCTTGCTGTGATGAGTCTTTGACGTGTTCCCGCGCCATCTCAGTGGAGCTCCTGGGTGCAGTGACTCTGATGTTGAGCGATATGAAGGTAACTGAGAGACAGGTGGGGGAAGCATTGCTGGCAGAGCCCCTTTATTCCCTCCAGACTGTGGGCCTCTACATCATCATTATAGCTCCCAGACTGGGCATCACTGTAATCTGGGACAAACACACCAGGGTCACCATCCAACTAGAGCCTCAGTGGAGA

Function

NR:

description
spiggin alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_00606223_00619716.mRNA True 2958 mRNA 0.45 23 606028 619716

Neighbor

gene id symbol gene type direction distance location
CI01000019_00496576_00497214 NA coding upstream 108413 496576 ~ 497615 (+)
CI01000019_00409331_00409726 NA coding upstream 195626 408835 ~ 410402 (+)
CI01000019_00206258_00209786 ALG10 coding upstream 395680 206171 ~ 210348 (+)
CI01000019_00028486_00103954 PPM1H coding upstream 502074 28486 ~ 103954 (+)
CI01000019_00642751_00656054 SLCO1D1 coding downstream 23035 642751 ~ 656667 (+)
CI01000019_00666293_00680914 NA coding downstream 46536 666252 ~ 680914 (+)
CI01000019_00681252_00695505 NA coding downstream 61327 681043 ~ 695586 (+)
CI01000019_00699257_00717659 SLCO1F4, SLCO1F3, SLCO1F2 coding downstream 79496 699212 ~ 717691 (+)
CI01000019_00739862_00741111 IAPP coding downstream 120146 739862 ~ 741200 (+)
G106963 NA non-coding upstream 102354 503165 ~ 503674 (+)
G106843 NA non-coding upstream 166121 436586 ~ 439907 (+)
G106842 NA non-coding upstream 177910 427086 ~ 428118 (+)
G106849 NA non-coding upstream 189505 415886 ~ 416523 (+)
G106840 NA non-coding upstream 190768 414609 ~ 415260 (+)
G107049 NA non-coding downstream 101847 721563 ~ 721803 (+)
G107056 NA non-coding downstream 123686 743402 ~ 743611 (+)
G107061 NA non-coding downstream 128224 747940 ~ 748197 (+)
G107062 NA non-coding downstream 129351 749067 ~ 749367 (+)
G107000 NA non-coding downstream 143125 762841 ~ 763126 (+)
G107312 NA other downstream 1009716 1629432 ~ 1629985 (+)
G107310 NA other downstream 1081029 1700745 ~ 1706990 (+)
G108050 NA other downstream 1721283 2340999 ~ 2341333 (+)
G108563 NA other downstream 2548632 3168348 ~ 3169195 (+)
G108454 NA other downstream 2592735 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038376 CABZ01069184.1 coding NW_003336509.1 KN149813.1 12050 ~ 48241 (-)