CI01000019_00642751_00656054 (SLCO1D1)


Basic Information

Item Value
gene id CI01000019_00642751_00656054
gene name SLCO1D1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 642751 ~ 656667 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_00642751_00656054.mRNA
ATGTGCTTTGTGTTCTTTGCCAAAGCTTTTCAGGGCAGCTACATGAAAAGCTCCATCACACAGATTGAGAGACGCTTTGACATTCCCAGCTCGCTGATTGGATTCATTGATGGAAGTTTTGAAATTGGTAATCTGCTTGTAATAGCATTTGTGAGTTACTTTGGTGCTAAACTTCATAGACCACGGCTGATAGGAGCTGGGTGTTTACTCATGGCCATGGGATCCTTCATAACTGCGGCACCACATTTCTTTCAAGGACTGTACAAATACGAGACAACACTTTCACATTTGTCTGCCTCCAATGGGACAGAAAGTACCCTACCATGTTTAACTAATGGGAGTCTTGCACAAGATCATGAAATTCCCACAGTGGAAAGTCAAGCAGAGTGTGAGAAAGCAGCCAGTTCCTCCCTGTGGCTCTTTGTCTTCCTCGGGAACATGCTTCGTGGCGTGGGAGAGACACCCGTCATGCCTCTTGGGTTGTCTTACCTGGATGACTTTTCAAGGCAGGAAAACACTGCTTTTTACCTGGCTCTCATACAGACTGTGGGGATAATTGGGCCCATGTTTGGATTCATGTTAGGATCTTTCTGTGCCAAGCTCTATGTGGACATCGGAGCAGTGAACTTAGATACCATCAGCATCAACCACAAAGACACGCGTTGGGTTGGCGCCTGGTGGCTGGGCTTTTTGATAACTGGTGGAGTGATGACACTGGCTGGAATTCCCTTTTGGTTCCTTCCCAAGTCTCTTCCTAAGCAGGGTGAGACTGAAACAGAGAAAAAATCGAATGTTCTAGAGGGCGAACAGGACCGCTTCATTGACAACAACAGTACTCCTCCCAACAAACCAGCTCCAGTTACCATGGTGGCTCTGGCTAAAGATTTTCTGCCATCACTGAAGAAACTCTTCAGCAACAAGATTTACCTGCTCATCATGTGCGCTGGTTTCATTCAAGTCAATGGTTTCATAGGAATGATCACATTCAAACCAAAGTTCATGGAGCAAGCTTATGGCCAATCAGCATCAAGGGCCATATTTTTGATCGGCATTTTAAATCTACCAGCTGTGGCGTTGGGAATCGTTGCTGGAGGGTTTATAATGAAGAAGTTCAAACTGAATGTTCTTGGAGCAGCCAAGATCTGCATAGGTGCCTCTGTTCTGGCTTTCACTTTGCTGCTTATTCAGTATTTCCTGCAGTGTGACAACTCACAAGTGGCTGGACTTACAGTGTCATATCAAGGGGCTCCAGAAGTGTCCTACCAGAAGAATACACTCATCTCTCAGTGTAACACTGGTTGCTCCTGCTCTCTCAAGCACTGGGATCCGATATGCGCCAGCAATGGCATGACCTATGCCTCCCCCTGCCTCGCTGGCTGCCAAACCTCCACTGGGGTTGGCAGGGAGATGGTATTCCACAACTGCACCTGTATTGGAGAGTCGTCTCTCCCCTATGCAAATATGTCAGCAGTGCTGGGCCAGTGTCCTCGAAAGAATGACTGTGACTACATGTTTAAGTTCTACATGGGGGTGTCAGTCATTGGTGCTTTTATTTCGGCTTGTGGGGCCACACCAGGTTACATTATTCTGCTCAGAAATTCTTTCTTGGGTCTTGTTTATGGCCTGTATGCTGCATCCTACCTGTTTTGGGGAGTCCTGTACAATAGACTGTCTCATCTTGAAAAGAAGCTCAAATTAAAGGACCAGTTAAAAGCTCAAGAACAGGATGGCAGTGGTGTTTCTAATAGCAATGGGAATGTGCCTTCAGCTATTGTAAAATGCAATGAAAATCCAGACCAGGAGACCACTATCTGAAGTTAGGCTTCCAGTAATTTTGCAAAGTCAAATGTGTGTATTGCACCAAAGTAACAGAGTGTTAGTAAAGTTATAACTTCTACTTGTACATTTATTGATAAGAGTATTATATGCTGTTTGTAAACTCATCGACAGGTCTTTTTTTTACATTAGGTTCAACTCAATCTTCATTTTCAGTTATTTCCTGGCTCCTGTATTTTTTACGCATTTATAGAACGGCATTCAAGCAGTATCCAATCCAACAACTACAGTATAAGCTAGAAAGTAATATATTATAGTCAAAGAAAACATGGTATGGATAATGTGGTTCCTCAGACTAGAACATTGTTACATAGAATCATTGTTACAGTGGCAGGTCATTGTGAGCTCACTGTTTCTTAGGAGTTTCTTGTCATGACATTATGATATATATTGGGGTCACATATATCATCATACTTTGTCATTTATATATATATATATATTGCAATGTTTTGTAAAATTTCTGAATGGAATCAAATTTTATGTATGCAGCTGTAAATAATGGACAGTATGTCATGTACATGGAACATTGGATCCTTTTGCAACATTGCTTATGAAATTAAAATTCTTTCTTTGTAAGTCCTTTACATATAGA

Function

symbol description
slco1d1 Enables organic anion transmembrane transporter activity. Acts upstream of or within microcystin transport and organic anion transport. Located in plasma membrane. Is expressed in several structures, including alar plate midbrain region; muscle; nervous system; optic vesicle; and pleuroperitoneal region.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_00642751_00656054.mRNA True 2428 mRNA 0.42 11 642751 656667

Neighbor

gene id symbol gene type direction distance location
CI01000019_00606223_00619716 NA coding upstream 23035 606028 ~ 619716 (+)
CI01000019_00496576_00497214 NA coding upstream 145136 496576 ~ 497615 (+)
CI01000019_00409331_00409726 NA coding upstream 232349 408835 ~ 410402 (+)
CI01000019_00206258_00209786 ALG10 coding upstream 432403 206171 ~ 210348 (+)
CI01000019_00028486_00103954 PPM1H coding upstream 538797 28486 ~ 103954 (+)
CI01000019_00666293_00680914 NA coding downstream 9585 666252 ~ 680914 (+)
CI01000019_00681252_00695505 NA coding downstream 24376 681043 ~ 695586 (+)
CI01000019_00699257_00717659 SLCO1F4, SLCO1F3, SLCO1F2 coding downstream 42545 699212 ~ 717691 (+)
CI01000019_00739862_00741111 IAPP coding downstream 83195 739862 ~ 741200 (+)
CI01000019_00750525_00759434 RYROXD1, PYROXD1 coding downstream 93474 750141 ~ 759844 (+)
G106963 NA non-coding upstream 139077 503165 ~ 503674 (+)
G106843 NA non-coding upstream 202844 436586 ~ 439907 (+)
G106842 NA non-coding upstream 214633 427086 ~ 428118 (+)
G106849 NA non-coding upstream 226228 415886 ~ 416523 (+)
G106840 NA non-coding upstream 227491 414609 ~ 415260 (+)
G107049 NA non-coding downstream 64896 721563 ~ 721803 (+)
G107056 NA non-coding downstream 86735 743402 ~ 743611 (+)
G107061 NA non-coding downstream 91273 747940 ~ 748197 (+)
G107062 NA non-coding downstream 92400 749067 ~ 749367 (+)
G107000 NA non-coding downstream 106174 762841 ~ 763126 (+)
G107312 NA other downstream 972765 1629432 ~ 1629985 (+)
G107310 NA other downstream 1044078 1700745 ~ 1706990 (+)
G108050 NA other downstream 1684332 2340999 ~ 2341333 (+)
G108563 NA other downstream 2511681 3168348 ~ 3169195 (+)
G108454 NA other downstream 2555784 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location