CI01000019_01185485_01189927


Basic Information

Item Value
gene id CI01000019_01185485_01189927
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 1185485 ~ 1190732 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_01185485_01189927.mRNA
GCTATCATTATTCAGGAAGACACAACAGCATTATCTAACAACATGGCTACAGGTAACCACTTTGAGTGGCAGCTGTTTAATGGACAGCAGTGGGTTTCTATCGATAATGATTTTGTCATTGAGGCCCATTACTGTCAGCCAGGGGCTAATGGGATCAGCATCTGCCTCAACATCGGGGCCGCCCATATTGACTTTGATGAAATGACAGTTGATGGACCTCTTCATAACCTTAGTATACGACGCATTACACTGCTCTCCACTAACCAGAAACAGGAAGTAGGCTGGTACTACAAAGATAACCATCGCTGGTGTGAATATGGATCTCAGGGATTCGGTGGGAGAGCATCCTCAATTGGAAGTGATTTTATAGAGCAGCAGTACAACAGCAACCCAAGTGGCTCAGTCCAGTTTACTGCAGGAAGCATGACTTACAAAGTGGACTTCAATGCCATGACTCAAATGAATCTATCCACATACATGTCGAGGAAATACATCTGGGAGTTTATGGGTGATGAGGGCATTTGGACAGAGTACCAGAAACCAGGATGTTCATTGGATAGTGCAGAAATCGAGAGGTTGTATCAGCTCAACCCTCAGTGCCAAGTTTCATTCACAGTCAGACGATTCTCTTACACTCTTTACTTTGGTGGAATGCATCAAGTGAACAATAAATATGGTACAAAAAGAGCTGTCCGGAGAGTCGCGAATGCAATCCAGCAAACAAACAGTGAATTCTCACAAGCTCGCTGGCAGTTCAAAGACATGGATGGCAAATGGAAGGATTATAGTAAAGGCGGTTCTCGGGGACATTGCAGCGTGTCAAGTGAAGATATTGAAGCCGAGTACCAGCAGGACTCCACTGGGACAATGAGTTTCAGGGCGGGCAGGTTCAGCTATGAGCTGGACTTCTCAGACATGACCCAGACCAACCAGTCCACTAACACCAGGAGACCTGTACGCCGCCTTCAACAATAAGACCTCACTTGCCTATTCTTACGTTTACTTTATTTACTTGTAGCTATATGTGAACTCAGGATGCTGGTTTATGCAATGTCTGCTAGCCATTCCAGGAATATGTGATATGAAATATCGAAATTATGTTCAGTTTGTCCATGCTAACCCATGTGCCTATATTGTTTTATTAACTGCCATAAAAAAAAAAACTGTTCTCATAGTGATTATGTTCTTGAACTAATTTCTGTTTTTATTCTTTATAGTTTTTTTATCTTTTCAATGCCTTTGCTGTGATAAGAAGATTGCATGTGCGATATCTTACGACTGCTTTCAACATTCATGTTGACCCCTTTTTTTTTTTTTTTTTAAATGCTACTTAATTTTATGGGAGTCCTAATAACAGGGTTCCGACACCTACTAGCCAATTAATTTCCATTGACTTTTCCATTACTTAAATGTTGATTATGATTACTAAATATTTTGGAAACTATCATTGACTATACAAATTTACATTCACTATTATCTTTACAAAATGTTACTTTTTCATGAAAAGAAAGTTTAATACTTATATTTCTGTTTATTCAACAACAATTTAACAAAATTTGTTAATTCTCTTCATAAACAAAGAAATGTCATGACAAAGCACTCCCTTACAGATTTTTTAAAAATAAAACATAATAATAAAAAAATAAGTACAACTTTTATCATATTTTTCATTTACTGAAATGTGCTTAAATGTAAATTTTCCACAAATTTTTTTTAATTTTCTAATAAAAATATGGTTTTGGGGTAAAACTTATCTTGAAAGATTTCATGAGATCCACTA

Function

NR:

description
Si:ch211-244b2.4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_01185485_01189927.mRNA True 1780 mRNA 0.37 11 1185485 1190732

Neighbor

gene id symbol gene type direction distance location
CI01000019_01173165_01178310 NA coding upstream 7094 1172544 ~ 1178391 (+)
CI01000019_01112433_01123179 ST8SIA1 coding upstream 60720 1112122 ~ 1124765 (+)
CI01000019_01067005_01080043 B4GALNT3A coding upstream 104383 1067005 ~ 1081102 (+)
CI01000019_01025556_01025846 NA coding upstream 159408 1024374 ~ 1026077 (+)
CI01000019_01021871_01022293 NA coding upstream 162944 1020747 ~ 1022541 (+)
CI01000019_01224023_01232161 USP44 coding downstream 33291 1224023 ~ 1232942 (+)
CI01000019_01281704_01306187 FGD6 coding downstream 89582 1280314 ~ 1306211 (+)
CI01000019_01310939_01319204 NR2C1 coding downstream 120207 1310939 ~ 1319586 (+)
CI01000019_01320371_01322904 NDUFA12 coding downstream 129639 1320371 ~ 1322991 (+)
CI01000019_01358330_01362294 TMCC3 coding downstream 167598 1358330 ~ 1363903 (+)
G107264 NA non-coding upstream 27448 1157789 ~ 1158037 (+)
G107263 NA non-coding upstream 28127 1156780 ~ 1157358 (+)
G107259 NA non-coding upstream 34174 1151088 ~ 1151311 (+)
G107257 NA non-coding upstream 36036 1149169 ~ 1149449 (+)
G107250 NA non-coding upstream 41710 1143477 ~ 1143775 (+)
G107205 NA non-coding downstream 24204 1214936 ~ 1216950 (+)
G107278 NA non-coding downstream 45649 1236381 ~ 1236640 (+)
G107279 NA non-coding downstream 46042 1236774 ~ 1237016 (+)
G107182 NA non-coding downstream 176335 1367067 ~ 1371980 (+)
G107193 NA non-coding downstream 184384 1375116 ~ 1375470 (+)
G107312 NA other downstream 438700 1629432 ~ 1629985 (+)
G107310 NA other downstream 510013 1700745 ~ 1706990 (+)
G108050 NA other downstream 1150267 2340999 ~ 2341333 (+)
G108563 NA other downstream 1977616 3168348 ~ 3169195 (+)
G108454 NA other downstream 2021719 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location