CI01000019_01067005_01080043 (B4GALNT3A)


Basic Information

Item Value
gene id CI01000019_01067005_01080043
gene name B4GALNT3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 1067005 ~ 1081102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_01067005_01080043.mRNA
GGTCGAGTGAACATGCACATTTTTGAAGACTGTTGTGGCGGATCCCTTGATCAACTTAAGAATAACCTGCTCTATCCATTATTTCCAAATGTGCGTACTACGGTGAGCAGACTTGCTGTGTCCCCTCAATGGGAAAATTATGGTCTGAGAATCTTTGGCTACCTTCATCCTTCAGAAACTGAAGAATATATTTTTGCTGTTGCCTCTGATGATAACTCAGAGTTCTGGCTAAGTTTAAATGAAAGTCCAGAAAACCTTCAACTTCTCGCCCGTGTTGGTGAGTGGCGTTTAAACCATGACGATGGCATATTTTCTGTGATAACCTCTGAGTTTTTATCATTATATGAAGATGAATCTTCTCTACAATTGGGAGATATTGAGCACATACCTCAAACAAAAGCAAGTTACGATAGACTCTTTGATCAAGTTTCCTTGTCACCCCATCCAGTAGAAGACAAGATCAGAGAAGACCCTCGGGATCACATCTATAAATACAAAATGCTAGATGAATCCTACCTGAAAGACTTGTTTCCTGAATGCCATTACAAACCAACTTACATACTCAATAAACAGATTGGACGATATCAAGGTGTATATTTGATTAGGTTTTCTTCAGTGTACCCAAATGACTTCACAAGGCAAACTAATGATCAGAATGATGAGATGTGCTTTTACAAACAAGATCCATCATTTCAGAAAGGTAAAGGACTTGCTACTTACCTGATCGAGGTTGAAGACCCTGATGTACAAAAGATTAATACAGGTCCTTTTTGGCAGCGTGTCTATGACGTGAAACCCCTCAATGCTGCTTTAAAGCAAACTGCTGTTGTGGCAAATTCCTGCAGAACAGCTGGAAACATTATGATGTCCCAAAGTCATGCCATGTCCATCGTTAGAGCCTTTTTGAAAGCATTGCATTCAAGAGAAGAGACACGTGGCTACTCCTTGTTGCATGTGGTGAATGTTGTAAGGCGTGAAGACAAGGATGTGGGCAGTCGTTATCTGGTGGAACTGGAACTTGTGGGCCCTCAGGGTCAGAAAGTTCTTGTTTCACGTTATGTTTATACACTTGAGTCATCAAATGAAGTGTTTCTCTGCAGTCCAAAAGCATTCAACTGGAACCCATCTGCTACTGTTCATGTAATTGTGGCAGTGAAAAATCAGGCCAGATGGATCATACAGTTTATCAGGGAAATGGAAAAAGTGTACAGGGTAACTGGGGACAAAAACTTCAATGTAATAATTGTAGACTACAGCAGCTCTGACATAGATATTGAGAAAAGACTCAAAAAGGCAAAATTACCAAGTTACAAGTTTAAGAAGATGGAGGGTAATTTTCAAAGAACAGGTGGCCTTCAAGCTGGAATAGATCTTGTTGAAGATGAGCACAGTATTTTGTTCCTTTGTGACCTGCACCTCTACTATCCTGTGAATATTATAAACAGTATACGAAAATACTGTATTGAGGGGAAAATGGTCTATGCTCCAGTTGTGATGAGGCTAGATTGTGGAGCTTCCCCAAGAACCCCAAATGGATTTTGGGAGATAGCTGGTTATGGTTTGATGGGAATCTACAAGTCAGACATGGATCGTATTGGAGGCATGAACACCAGAGAATTCAAAGATAAATGGGGGGGTGAAGACTGGGAGTTATTAGACAGAATCTTAGGCAATGGGTTAGAGGTGGAACGACTCCACCTGAAAAATTTTTTCCACCATTTTCACTCCAAACGTGGAATGTGGGTAGCCAACAATCCAGCCTAAATGCAAATGATTCAGTCAAGTGCAAACATGGTAGTTTTTTTTTTTTAAAACACACCTACCTACAGTAGTGCTGATGGCATCTTTTGCAAGCAGAATCAGCCTTTCGAATGAAGTTGGTGAACTGGATGAACTTTGAACAAGGTTGAATGTTTTATATTTATACAATGTAAATTTAGTACATAATACCATTTTTTTGGATATTTTTGGATAAAATGTGTTGGTTTGTGTATATATTTGCATCTGTAAGTTTAAAGTCCATGTAAAGCAATATTAAAATATGTGTTTTGAGTTTGTCACACCACAGAAAAATGTATAAACCACCCAGCCAAATTTGTCTGCAAAAAGTAACCTGCTCTGTCTTGTCTGTCAACGCGTTATCAGTGTCCTCTTTGCTCCGCGATGTATTTCTGATAATGTGTGGCGAGAGATCGGCACGGCTTGTCGGACGTAGCAACAGTAACTAAAGGGGGCGGGTCTTTGCGAACGGTCAATTGAGCGGGTGAGCCAATGATGCTAATACGCTGTAGTTATTATAGTGTTGGGGCGGAAAAAAAAATCCTGAACACAGAATTGGTGAAAAACTGTTTAACGCTCTAACTCCACAATTCAGAACTACATAGTTCACAGTCTTTGTAATGTGTTTCAGCAATACATTTGTAACATTTATAAAGTGTTTAGAAGCAATTCTCAGAATTGACTTTACATGGACTTTAAGTAGGCTATTTTGCATTTGATCAATTGTTTAGCATATGATGACATGAATACAGTTTAATGACACTGAAATATTGTAAGGGGCGGTTCACACAGAACACGTTTTTCCATTCCGCTGAGCTGCTTTTCCATTGTTTTTCAATGTAAACACGTGTTGATGGACATCTTTAACTGCTGACTTCTCATGCATGACAAGTTATTCTAAAAAAAATCTCCATTTTTTTTTTTTTTTTTTTTTTGTTCCACTAACCTGTGTATCGTGTTTTTTTAACAACAAAAACGAGTTCTGTGTAAACCGCCTCTAACTCAGTACAACAAATTCTTGGTCTTTATCACACACAATGTCAA

Function

symbol description
b4galnt3a Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Orthologous to human B4GALNT3 (beta-1,4-N-acetyl-galactosaminyltransferase 3).

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_01067005_01080043.mRNA True 2823 mRNA 0.39 15 1067005 1081102

Neighbor

gene id symbol gene type direction distance location
CI01000019_01025556_01025846 NA coding upstream 40928 1024374 ~ 1026077 (+)
CI01000019_01021871_01022293 NA coding upstream 44464 1020747 ~ 1022541 (+)
CI01000019_00871622_00875254 NA coding upstream 191478 869371 ~ 878017 (+)
CI01000019_00848936_00865021 NA coding upstream 201502 847966 ~ 865503 (+)
CI01000019_00809471_00828531 NA coding upstream 237263 808791 ~ 829742 (+)
CI01000019_01112433_01123179 ST8SIA1 coding downstream 31020 1112122 ~ 1124765 (+)
CI01000019_01173165_01178310 NA coding downstream 91442 1172544 ~ 1178391 (+)
CI01000019_01185485_01189927 NA coding downstream 104383 1185485 ~ 1190732 (+)
CI01000019_01224023_01232161 USP44 coding downstream 142921 1224023 ~ 1232942 (+)
CI01000019_01281704_01306187 FGD6 coding downstream 199212 1280314 ~ 1306211 (+)
G107219 NA non-coding upstream 27589 1039192 ~ 1039416 (+)
G107114 NA non-coding upstream 158704 907218 ~ 908301 (+)
G107004 NA non-coding upstream 230819 835671 ~ 836186 (+)
G107011 NA non-coding upstream 250842 789727 ~ 816163 (+)
G107239 NA non-coding downstream 19260 1100362 ~ 1100567 (+)
G107247 NA non-coding downstream 59340 1140442 ~ 1140901 (+)
G107250 NA non-coding downstream 62375 1143477 ~ 1143775 (+)
G107257 NA non-coding downstream 68067 1149169 ~ 1149449 (+)
G107259 NA non-coding downstream 69986 1151088 ~ 1151311 (+)
G107312 NA other downstream 548330 1629432 ~ 1629985 (+)
G107310 NA other downstream 619643 1700745 ~ 1706990 (+)
G108050 NA other downstream 1259897 2340999 ~ 2341333 (+)
G108563 NA other downstream 2087246 3168348 ~ 3169195 (+)
G108454 NA other downstream 2131349 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028810 b4galnt3a coding NC_007115.7 CM002888.2 26390851 ~ 26413391 (-)