CI01000019_00848936_00865021


Basic Information

Item Value
gene id CI01000019_00848936_00865021
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 847966 ~ 865503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_00848936_00865021.mRNA
CTATAAAAATTGTGAATTTACAGTATATTTGTGGGTAATATTTCCTACACTTTTACAATTGTAATTTTTGACAACTGTCATCACAGTGAAGAATAGCGAGACATGATGATTAATGTAGCACCACTGTGCTGTGGAATCACAATGATTATCCATGTCTTCATTGCAATTATCTCATATATTTAAACATTAACTTTAATAGTGTGATAACATAACTAAGTTATAACCCCATTTTTTTTATTTTTATAAAACATTATACTATTTCTTTACTATAATGTACAACAACATTACCACTTGCAGTGATCAATGGTTCACTGCAGAAAAAAAAAAAAAAAAAAAAAAGATCTAGCCCGCATAGATTGCACAGTAAAATTCTGAATGCTGTACAACGTGTGCAGAATTAAAATGCCTAATATTCACCCATTGAGCGTTTTGCTGTCCATTGGTCATGCCTTAACTTTGCAATTTCTAGTATTGCATTAGTATTGCATTCTTCTCTTGAGCATTTAATAATTATTGACTTTTCAGTCTGAGTTAAATCTCTTTTTTGGCTCATTTTGCCTGTAAAAGAAAACCTGCCTAATAATTATGCACACCTGAATATAAGGGGTTTTTCATTTCCGTGAACAATTATATATCCCTTGAATGAAAAATCATTAAATACAAAATGAATAGTAGTTATTAAGATTGATGTGGTTTAGAATTGGTCAACTGTGCTTGGAAAAAAAAATATGATCAGAAAATCAACTTGCCTAATAATTCTGCACACGGTGTATTATTACTGTTAATATTTTAAAATCTTGGCTTTTTTTTTTTTTTTTTACAGTGTAACATCATTTTTCCCAGAAATCCCATTTGAAGTGTTGTGTTTGATCAAGCAAACATTCAGAGTCAGTAGCCCTGCACTGGACAACTCAATAATACAATACTGAGGTGGAGTATTACCTGACTGTGGTGTGACGGTATTCCTGTGATGGGGAAGACTGGCCAGAGCACGGTGGACCTCAACTCACCCTCAGACGTGAAGCAGGCAGTCCCATTTGAGGACCTTCCTCACAACAGTGTTCCCGTAGAAGAGGAGAAGGAGAATAAAGTACCAGACAGAGGAGCGTGGAAGGGAAAATTTGACTTTCTGCTGTCCTGCGTTGGATACGCCATTGGGCTGGGAAATGTGTGGAGGTTCCCATATCTTTGCGGAAAGAATGGTGGAGGAGCTTTTCTCATCCCCTACTTCACTACTCTGGTGTTTGCTGGTATCCCGCTGTTTCTGCTAGAGACGGCATTAGGACAGTACACATCAGTAGGGGGGTTGGGAGTATGGAAATTAATACCCATGATGAAAGGTGTGGGTCTGGCTGCTGTGGTTTTGTCTTTCTGGCTCAACATTTATTACATCATCATCATTGCCTGGGCTCTCTACTACCTCTTCAGCTCTTTCAAAGCAGAGTTACCATGGCAAACTTGTGATAACCCTTGGAACACTGATCGTTGCTTTTCCAACTACAGTCTGTTGGACACCACCAACCTGACCAGTGCCGTCACTGAGTTCTGGGAGAGGAACATGCACCAGTTAACAAATGGTTTGGAGGAACCAGGGGAATTGCGCTGGCCGTTGGTTGGAACTTTGGCGTTGTCTTGGATTCTTGTCTATTTCTCAATCTGGAAAGGTGTGGAGTGGACGGGGAAGAAAAAGCCACAGAGCGGGCTTCCATATCCCGAGCTTGAGCAAAGGAACCAGCAGGTGTGGTTAGATGCTGCCACTCAGATCTTCTTCTCTTATGGTCTGGGTTTAGGTTCTCTCATTGCTCTGGGCAGTTACAACTCCTTCAACAACAATGTCTACAAAGATTCTATCATTGTGTGCTGTATAAACTCCTGCACCAGTATGTTTGCGGGGATCGTCATATTTTCCATTGTGGGCTTTATGTCACACATCACAAAGAGACCCATTGAAGAACTGGCTGCGTCAGGTCCTGGTTTGGCATTTCTGGCCTATCCACAAGCCGTCACACAGCTTCCCATGTCTTCACTCTGGGCTATTCTCTTCTTCTCAATGCTCATGATGCTGGGATTGGACAGTCAGTTTTGTACAGTGGAAGGCTTCATAACAGCTCTAATGGATGAATATCCCACAGTCCTGAGGAAGAGAAAGAAACTCTTCATCCTCATTGTCTGCATTGTATCCTTCATTATCGGCTTCTCTAACATCACCCAGGGTGGCTTATACGTGTTCAAATTGTTTGACTACTACTCGGCCAGTGGAATGTGTCTTCTGTTCTTGGTCTTCTTTGAGACAATCTCCATTTCTTGGTTTTATGGTGCAGAGAAATTTTATAAAAATATTGAAGAAATGATTGGTTATCGGCCTTGTGGCTTTTGGAAACAATGCTGGATTTACTTTACTCCAATAATTTGTTTGGGTGTTTTCACATTTAGTGCCATAGAAATGACTCCTCTGACATTAGGGAAGTATGTGTACCCGGCCTGGGGACAGGGCATCGGCTGGCTAATGTCCCTTTCCTCCATGATTCTGATACCCGGATATATCATCTATATGTTCTTCACGACCAAAGGCAGCATCCGACAGGCAAGAACTCTGATGGATTTATTCAATTTCTCACAGTATTTACCTCAAGTTGACGAGTGAATGCAAGTGTTTAGTGTTCTGTTTCTCTAGAATAACAGAATGAAAATGATACAAGGTAGTTGACACATAACACATATACACTATTTTTTTTTTATTTATTTTTTTTATCACCATTAAGATTTTAGGTTCAAATTCATATGAATGTATGAGGGAGAGTGTATATCTTAGGCCCCGTAACTGTCCACCATTTATTTTTTCACCATTTTGATAACCTTTTACCTTTACAAGCTCATTTTATATGGTGTTGCAGTGTGGTAAATTTTGCAGTAAACCTAGTCCCTCAGTTAATATCAGGTGAAAAAGGCTGCATGCATAATGATAATAGAAAAGTATTAGCTTCTGTTTAAAATGGATTCAGATGGAGATTTGTATGTCATACTGCAAGATATGTCAACTTTACAAAACTATTTAAGGTTAAGGTCTAATGAAACCTATATGAGATATCATAAAATAGACTAAAAAATGTATTAATTGACAGCTAA

Function

GO: NA

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_00848936_00865021.mRNA True 3126 mRNA 0.39 14 847966 865503

Neighbor

gene id symbol gene type direction distance location
CI01000019_00809471_00828531 NA coding upstream 18224 808791 ~ 829742 (+)
CI01000019_00791525_00800217 NA coding upstream 47550 791219 ~ 800416 (+)
CI01000019_00786469_00789270 NA coding upstream 58397 786413 ~ 789650 (+)
CI01000019_00785792_00786324 NA coding upstream 61568 785792 ~ 786398 (+)
CI01000019_00750525_00759434 RYROXD1, PYROXD1 coding upstream 88122 750141 ~ 759844 (+)
CI01000019_00871622_00875254 NA coding downstream 6119 869371 ~ 878017 (+)
CI01000019_01021871_01022293 NA coding downstream 155244 1020747 ~ 1022541 (+)
CI01000019_01025556_01025846 NA coding downstream 158871 1024374 ~ 1026077 (+)
CI01000019_01067005_01080043 B4GALNT3A coding downstream 201502 1067005 ~ 1081102 (+)
CI01000019_01112433_01123179 ST8SIA1 coding downstream 246619 1112122 ~ 1124765 (+)
G107004 NA non-coding upstream 11780 835671 ~ 836186 (+)
G107011 NA non-coding upstream 31803 789727 ~ 816163 (+)
G107066 NA non-coding upstream 65818 781673 ~ 782148 (+)
G107000 NA non-coding upstream 84840 762841 ~ 763126 (+)
G107062 NA non-coding upstream 98599 749067 ~ 749367 (+)
G107114 NA non-coding downstream 41715 907218 ~ 908301 (+)
G107219 NA non-coding downstream 173689 1039192 ~ 1039416 (+)
G107239 NA non-coding downstream 234859 1100362 ~ 1100567 (+)
G107247 NA non-coding downstream 274939 1140442 ~ 1140901 (+)
G107312 NA other downstream 763929 1629432 ~ 1629985 (+)
G107310 NA other downstream 835242 1700745 ~ 1706990 (+)
G108050 NA other downstream 1475496 2340999 ~ 2341333 (+)
G108563 NA other downstream 2302845 3168348 ~ 3169195 (+)
G108454 NA other downstream 2346948 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006821 NA coding CM030134.1 CM030134.1 21414320 ~ 21435187 (-)