CI01000019_00871622_00875254


Basic Information

Item Value
gene id CI01000019_00871622_00875254
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 869371 ~ 878017 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_00871622_00875254.mRNA
AATGTCAGACAAACATACAACGTGTCCAAAGATGGTTGCTGGGATTGAATGGCCTTTTCACAAGGGCCTTATACGTTCCAAGTTGCTACATAAAGTTCAAGTACAAGCATTAAAAGATCTCAGTCTTCTTTCAGACCACAGACTGGATGAGCTGGTGATGAGTGGGGCTCTGGCTGAGGAACGCCTCCATGCGGCCGTGTGCGCCTTTGTCCAAGACGATGACCTTGACAATTTGCTGGCACTGGATGAGCGTGTCGGGTCGTATCTCGGTCAGGGCCACGGGCTGGTAGGAGTGCGAAGGTGTGGGGCTGGCGCGTTGCAATGGAGGCTGCTGGAAGAGCTCCCTCTGGTGGTTGAGAAGGGCAGCGTTCTCAGGGCTCGGCGGTGCCGCGTTGAGCTGCCCTCCGGTGAACACACATCACAAAAGACATGCGTAAAGTGTTGCGTGGCACAAGGGGTTTGCTCGGTGTCTTGCAACTCGGACAGAGGGTGGGAAGCTGGAATCGGGGATGCAGATGTGGAGGGTTTTGGGGGCCGTGTGTTTGTGTCTCTAAGGAAATGGCTGGCGTTTCCTCTGACCCCTCTGCTGCCTGCGATGTGTTCTGACAGCCGGTGCCCTTCAGAGGTTCGCGGGGTGCTGACATTTACATGTGGCATGATTAAGGCGAGGGTTTTCAGTGCCAGACAGGAAGTTGCTGCCACTCTGATCATGTTCAGGCTAATAGCAGCCCACTAATATGCTACGGCGCCATCGGTGTGAGCGAGAACTCTGATTGGCTGTTCAGCTTAGAGTGCATGAGAATAAAAGCGAGCAAAGAAGCCAAGATGGCAGACAGAACGTTATCCTAATTTTATGTCATCTTATCTGAGCATTCCAATGTGTGAATATTTTTATAACAACACGAGCCGCCTGGAATGAAGAAAGTATTTTATAGTACATTTTAATCTGTTTTTAATCTGAAATATGTCAGATTATGTCAGCAAAATGAGGTATGGATACTGTTTTTAA
>TU121663
GCTTTGATATGAAGAAGATTAAATAATGACAGAATTTCCATTTTGGAATGAACTATACCTTAAATGTGTGAGAAACAAAGGATGCAGCGTTCATTCATTAAAGTTAAGAAGAGAGGGATAGACAATTTGCTGATGTCCAGGTTATACAAAAAACTCATGTGTTGAGTTTCTCACCAATATATATGAAGCACCTGGTGTTCATCACACAAATCATCACTGTACATGGAAATAAAGACACAATGAGAAGAGGAAACAAAGATACGATTGGGAGCTTCAAACAGCAGCAATATAATTATGAAACAAACGCCCAATCATATAAGAAAACAGAGAAAAAAGGACACACAGCTACCTATGACACATCAATGGTGTTACGATTACGAATACTACAGCTTAAAGTCAACATGAAATCAAATTAACACACATTCCTGCCTTATATGCCTCTGAAACAACTTTGTTTTTCTCAGGTGATATTGCAAATAGCTAAATAGCTAAATAGATTGCTATTTAGGCAATATTTACAGTATATTAGGCCGTGTAAAGCGTTTTTTTTTTTTTTTTTCCAGCGGCTAGCATACTTTTCCAATTGTTTTCAATGGGAGCCCCACATTTTTTAAACGGCAGGAGCGTAACGAGGCGCTGAGCGTCTTTTTCACGCTCAAGTGCTGAGCGCTCAGTGTTTTTTACTGGTTGCCTCGAGTTGAAGAATGTTCAGCTTTCAGTTTTTACTGCGCTGGCTCATCACTGTCACTTTTTAGCCAGCCGTCCAATCAGAGTGGAGGAGGGGCAGGACAAATACAACACGGCCTCAACAAGCAGAGAACAGAACAAAATGGATAAGAAATTAATATTGCAGATCTCCGAACATACATAGCAAGTACTCTACTAGCTCTCAAGCACTCACAGCTAGGGGTCAGCAAAGCATCTAATGTCAAATTTAAAAAAAAAGAAAAAGATTCACCAACAGGGGCTATCGAGCATGAATTTCTCCTTTAAGGTCTTTTTGCACACTGAGTCCGAAATTCACGTCCGAAATTTCCGCACGTTAAAAAATAAATACGACCTCACGTTGTGTCAATCACATTTACACACTGTCTCCGAAACTTTCATCCGTCATAAAAAAATTTGGATCAGGTTCCATTTTCTGCATTTTTCGCATCCGTGGCATGCATTTTGAGAGACGTTTTGACAATTCAGAGCCACCGTACAAACGAACGCAAAATCCCGAATACCATCTGACAAGTTGATACACGTCGTCTACAGCACAAAGCAGTAGCACTGTATGACAAAGTGCGGAACACAAAGAGACAGAATATAAAGACAGACTGTGCCAGTATCGCTAGCAAAGCATCAAACTGAGCCACTGACATCCTGAAGTAAACTTAGAAATGCTCAGGATAATCACGCAACTCCTTGATGAGGTGGAACACTCTTTCCTCTCTACGCAATCTCTGGTTTGGATGGACCCAATATTTCCTCTTTCTTTTTCGCTTTTTAAGAAGAGAGAGGACAACTAAATCATGCTCACTGCTTGAAGACTCCATTTTGTATTGTTTTGCAATTTTTTTCACAACAGAGTCATTAATACGCATCGGACTCAGTGTCCAAGGTCTCTGTGGATCATGAATGCGAAAAAAAGCATACGAAAATTTCGGACTTCAGCCTCCACGTTCCTTAACATAAATTTATGTCTGGATCTATTATGGAAACACCCACTTTTTATGGTCCAATCAAAATTGTATCTAAATATCACGTATCACTTCACACATCATTAACACATTACATGGTGGAAGCAAAAAAGGTGGTGAATTCAGTTTCATGTTGACTTTGTGTTATAATGACAGCTTTTATCAGAAATGGTTGGACTGTGGGTAGTTAACATTTATCATAGCTAATTCTTTGCTGCTTTATATGCTGATATATGATAGCTACATACAAGCAAAACAAAAATAAACCATTGGACTGTTTTCCATTTAGCTGATAAAATCAGATCAAAACCAGACAAACATTTAGGTTAAAGTGTTCTGTGCCAACAATGTGCATCTCATTTGATGTTTCAAGTGTCACTTGGCTCTCGAAAATCTTCAAACAAGAGTTTTAGGAGTCAAACAGCAGATATAGATAGTGCTGATGGTGTGTCTCTTGGGCGTTTTATGTAGTTGTGAGTATTGATGAAGGAATATCACAATGAAACCATGTTACATTGTCTGAGTCATGTGACAACAGTGATGCAGAATTCTGTCATCTTTCACAGAATGTCAGACAAACATACAACGTGTCCAAAGATGGTTGCTGGGATTGAATGGCCTTTTCACAAGGGCCTTATACGTTCCAAGTTGCTACATAAAGTTCAAGTACAAGCATTAAAAGATCTCAGTCTTCTTTCAGGTACTCTCTGAAATTCCTGAGCGTGAGAACTATAGCCGTTGCAAACAGGGTTCGCTGGCTGTGATTGGCTCTTTTTTTCCCATCTTTGAGCCGGGATACATTGCCATACACTAAAAGCCCTTTCACATGACTCGGGCTTTAACACAGCCCTCTGCATGCTTTGACGTTCACAAAGGCAATTTTACGAAGTTGCTAGGTAGTAAATGGTGAACATAGTGAAAGCCAATGGAAGAGGTAACACGTATTTGTGTTTAAAAGAGGAAAAAAGTCCAACGCCAATATTTCAGCCTAAAAACCTAAAAACCATTTTATTCACTAACCATCCACAATCCAGTTTAAAAGCACTGTATGAGCTGGTATAGTGCTGCGCCATGTTTTTAAATTTTAAATTAAGTCAATGTAATTATTTTTTTTTTTTATCCAAATAAGACTTATTATAGGAAGTAATTCAACTAAAGATTCATGCTATTTGCATGCACTTGTACATATTTTTAGAGATCATAGCAGATATAATTCATCAAATGATGATCAAACAATGGAGACGAGTGTCATAAATGGCCATTAATACTTGTTCAGTCCACTGGAGCAATGCTGTACTGTCCTAGAAAAGCATATCAGATTGTAGTAGTCCGCTGGGATTGTGACATGAAAAATGTGTTTAATAATATTTTTGGCAATGTTTGTGCCAAGATTTGCGTGTCAGGTGCTAAAACAAGAACATGCAAATTAATGGTGATATAGGTTGATGCAATTCATTAGCGAATTCCCCTGGAATATTAAAGATATGTTTTTGCTGTTGTAGCGTACAGCTTCTCTGATCTCATCTTGTTTGCTCACATAATGATAAGTCATGCAAATTGTCTGGTAATGTTTGGTTATACTTCAAAAGGTCAGCAGAAAATAAGGGTCAAAGTTGAAATTTTCTTAATTTTGAGTCGTGTACGTCAACACATTGGGGAACAATGGTGTGAGTCATGTGAAAGAGCCTTAATACTTCCTACATTCTTAATTTACACACATATATCAGTTAAAAGGAGTGACATAAAAGACATTTTCAAAGACAGGTGATAAGGAAGTAAATCACATTTTACAGGAATACAACATCAGCCACAAGTGAGGGAAGAAACAGTTTGTGGTTACCACTTAAAAGTAAAAAAAAAAAAAGTGTACCTGGAGGGAATCTAAATGATCGATATAAGCACAAATGTTTACTCTAGCCCTAAGCGTTCAAGAGTGCAAAAAGTCCACGGTGGAGGGTGTCCTCATTTTGGCACGTTTATCATTTTCCAGTCAAAAACATACACACACAATAAATAGACACATCAGTAGGATAATAAAAGCCAAAAGGGTGATTTTACACGTAAAACCAGCTCTCACACAAAAGCAAGTGTCAGTGGAATTGAAACGAATATTGTCGGGTATCACATTTTTCCGTGAAATCATTTTGTCTATAACAAAATGCACCAGAGAAATCCTGTCAAGGACAAGTACTCAACAATATAATCTCAGAGAGTGTCCAGAAAGACGAAAACCGTTAAGAAATTTGTTAAAACTACATAACGTTTCAAAATACACAGCAATTAAGTAAATCATATTTTTCTTATTAGTTGTTTCACATATCTGCAAAGTCAATAAAGTCTTCATATCTTCATGTCTGTTACCTTAAATATATGTATATAGATAGCTTTTTTCATTATATTTCTTTCATGTATATACATATGTAGATAAATACTGTAAAAGTGTGCCTGCAGTTTTGTTGGTTTGAACTCTACATTAGACTACGAGAGCCACTTGGGGTCCTCTGCAGTGCAAGGCGGGGATCTGGGGGTATATACTGGTGAGGGTGGTTATATGGTGGTGGTGGTGGAGGCAATGGAGGTTGTGAGCCATCGTTGCCCCCCTGGTTGCCTCCGCTGTCAGGTGAACGCACTGGTGTGGAGACCACAGACTGGATGAGCTGGTGATGAGTGGGGCTCTGGCTGAGGAACGCCTCCATGCGGCCGTGTGCGCCTTTGTCCAAGACGATGACCTTGACAATTTGCTGGCACTGGATGAGCGTGTCGGGTCGTATCTCGGTCAGGGCCACGGGCTGGTAGGAGTGCGAAGGTGTGGGGCTGGCGCGTTGCAATGGAGGCTGCTGGAAGAGCTCCCTCTGGTGGTTGAGAAGGGCAGCGTTCTCAGGGCTCGGCGGTGCCGCGTTGAGCTGGTACGTCTGAAGCCTGTTGTGAATTGACACCTAGTTTAGAAAACAGTCAGAGATAGCATCATATGTTATAAGACTGTTCTCCTACCGCCATCAGCCCTCCGGTGAACACACATCACAAAAGACATGCGTAAAGTGTTGCGTGGCACAAGGGGTTTGCTCGGTGTCTTGCAACTCGGACAGAGGGTGGGAAGCTGGAATCGGGGATGCAGATGTGGAGGGTTTTGGGGGCCGTGTGTTTGTGTCTCTAAGGTGCATGGTGGTTATTAAGAGGACACTGAGGGCCCCGGTGTCTCCCTTGGAAACCACTTGAGCATTTTAGGAATAGAGGATGAAGAACGATCAGGGAAGAAGGGGGACACGAAAGAGTGGGTCAGGTTAAACAATGGGAAGGGTGTAATTGGACAACTACAGACGACACACATCCGAACGCATGCCATCACTATTTCTTACACTTAAGGTTTGGGACTTGAGTTTGCCCGGACTTGTAAACAACTCTCTCTCTCACTCTTTCTAATGATCTCCTGTGCTCTAATAATGACATGTCTCCACAATTGTCAGTTTAGGTAAAAACCATGTTGGTGAACAGACGATTCTAGTATGATGATTAGAAGGTTTTAGCTAGTTTTAGGTATTTTAGATTTAGTATGTTAGGGCTGCCAAAGATCTGCACTAAAATACTACAAATGTTTGACGGCATTTTATTATTATTATTTTAGTTAAATGGATTTGAATTTGCATATTCTAAATCTGACATGCTGCAAACTGCCATTAAATTATGAAATATAAATCCATTCTGTATAAATGTGACTATACTGAAGTTCAGCAACCCTCCAACACACTTTAGCTTCCATTTTTGTCTCTCTTCTCAAATGTTTGTGTCCATCTTAGCACACTTTTCAGGTCATGTCCATCTTGGCCTTACATCCCTGTCCAGCTATCATGTGTCAATCACTGCCATCCATAACAGCTAGAGCATGTTTTAAAATGTATTATGGCAGTACTGCCATGTCTAAATTGGCAGATGGCTCAACTAGTCTATAGTGGTTGGACACCTTGTTTCTCTCTTTTTTCTCTTTCCCTCTCTCCTCCAGGAAATGGCTGGCGTTTCCTCTGACCCCTCTGCTGCCTGCGATGTGTTCTGACAGCCGGTGCCCTTCAGAGGTTCGCGGGGTGCTGACATTTACATGTGGCATGATTAAGGCGAGGGTTTTCAGTGCCAGACAGGAAGTTGCTGCCACTCTGATCATGTTCAGGCTAATAGCAGCCCACTAATATGCTACGGCGCCATCGGTGTGAGCGAGAACTCTGATTGGCTGTTCAGCTTAGAGTGCATGAGAATAAAAGCGAGCAAAGAAGCCAAGATGGCAGACAGAACGTTATCCTAATTTTATGTCATCTTATCTGAGCATTCCAATGTGTGAATATTTTTATAACAACACGAGCCGCCTGGAATGAAGAAAGTATTTTATAGTACATTTTAATCTGTTTTTAATCTGAAATATGTCAGATTATGTCAGCAAAATGAGGTATGGATACTGTTTTTAAATAAATAAATCAAAAATTAGTGTAATTTTAGTAGTACCGCTGTAGCGTTTTAGAATATTTGGTCCCACTTTATAGTAGGTGGCCTTAACTACTAAGTACTTACATAAAAAAATTAAATAAATAAGTACAATGTACTTATTGTGTTCATATTGTATTGCAAAACACATTTGCTGCTATTGAGGTAGGATACGGGTAAAGTTAGGGACAGGTTTGGTGGTATTGGTAGGTTTAAGAGTGGGTTAAGGTGTAAGGGATGGGTCAACAGTGTAATTATAAATGTAATTACAGAAATTAATTACAGATATAATTACATGCAGGTGTTTTTTAAAATATAAGTACAATGTAAAAACATGTATGTAAACAAAAAGTGCATTGTAACAAATTAATTTAAATGTAAGTACATAGTAGTTAAGGCCACCAAATATAAAGTGGGAGAGAATATTTTATTTTATATAATGCAGGTGTCACAAGATGAGGATGAAGGACTGGAGACAGGAATATCAACGTGGTTTATTCAAAGAAAAGGTAGACCGGCATAACAGTGTGCAGCAAAACACTAGCATACATGGACGTCAACCGACAAACACTGAGTGAACAGGGAGGAACTATATACATGGTGGTGATGAACTGAATGATGAGCAGCTGTGATGATGATTAGTGTCCATGGTTACTGATGAGTGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAACAAAGGAACACATGTGGTGAATGAAAAACTGAAAGTCCATGAAAACACTAGGGAAAAACACAACTAAATATTCGTGACAGAATGTGCCCCCCTCCTGGAAGGCACGACCTCGCGGCATGAAGAGGTGAAGGAGGAGGCTTAGGAGGAGGGAGTGAAGATGGTGGAGGGATGGCGACAGGAGCAGGTGAAGGGATGATGATAGCGCACGGGGGGATATGACAGACGGACGATGAGACCCCGGTGGCGATGATGGTGTAGGTCCGATGGCACAGACCCAGAGCACAGAGATGACAGCCCATGGTGGAGACAAGGGAGGGAGGAGCCAAGGTGGCGTGGAGGCTGACATCAACTGGGGGACGAGCGATGGAGACGGAGCCGATGGATCCCAGGGCGCAGACAGAGAGCCGATGGAGATGAGTAACATCACTGGCACAGGAGGCCTGGGTGATGCCACAGTGACGAGCATCTGAGGAGAAGCCAGATTACCCGAGGACTGAGGCCAGTGTGCCAGTGTGATGGAGGACCGAGGCATAGCTAAAGGGAAGGAGGAGCCCTCTGCAGCCATAGGGGTGGAGGAACAGAGCGTAGCTGAAGATCTGCAAGTCCGTGGTGGAGGTGGTGTGATGACTGACCAAAGGGGAGCTGATGGGATGAGGGAACCAGGTAGAGTAGAAAGGCCGAGGGTGTCTGGTGGAGCCAAGGTGGAGCGGAGAGGTCGACGGGCCGAGATGATCAGTGGCTGAATGCGGTGCTACAAGATCCATTCGCTCAGGAGCTGATGGTTGTTGGATGACCTGTGGCTTGACGTCACAGCATGTTATTGCAAGAGATGGCGAGGGGCTGCAAAGTTCCACCAGAGAAGGGGCTGGAGGACTGGCTGAGAAGGGCGGTGACGGAGGCAGATGGAGATTGACAGGGTTAAAAGTAATGGTGCATAGTCCACGCAGGTCTCTGTGCTGTTTAGATACAGCGATGACGGTTCAGAGGAAACAGGAAGAGAGTTCATACAGTCTATGGTGCTGTCTAGGAACAGCGATGAAAAAAGAGAAATGGGGTGGGAGACGATACCTCTGTATTGAAGTCCATCAGCCAGTCCTCAGTCTCCATTTCCACCAGTATACCCTCAGCCACAGATTCACACCCCTGGTCAGACTCACTGGGGGGCCCCCCTTCCCGGGGTGAGGGTCAGTGCTGTCCACTTGTCCTCGGGCTCTGGCTGGCGCATCACGGTGGGTGGTAGCTCTCCGTCCGTGGTGGGCTCACACGATACTTCCGTGGTTGCAGGTGGTGAAACAGGCTCTGGGTCCAGCTGTGTTCTGGACCAGGGGTAGACACCAGATGATGGCATCCCTCCAGTTTAATCCAGAGGTGTCTGGGAGGTGTATGGGATGGTGGTAGTTCGCCCCGATCCAGAACAATGACTTCAGGGTCTCGTCATCGAAGGTGCGGGTGACGGCAAGAAGACAGAAGTCTTTGGTGAAAAATAAAAAAAATCGTGGCTCTACTGAGCAACAGCAGCAAACCTGGATGCATATTCCATTTTTGATTGGTCGATCTGACACAAGATGAAGATGAGGATGAAGGACTCAAGACAGGATCAAAATATCAACGTGGTTTATTTAAACAAAAGGTAGACAGGCGTAACAGTGTGCAGCAAAACACTAGCATACACAAACATCGACCGACAAACACTGAGTAAACAGGGAGGAACTACAGTGCCCTCCACTAATATTGGCACCCATGGTAAATATGAGCAAAGGTGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_00871622_00875254.mRNA False 1009 mRNA 0.50 4 871622 875527
TU121663 True 8626 lncRNA 0.42 2 869371 878017

Neighbor

gene id symbol gene type direction distance location
CI01000019_00848936_00865021 NA coding upstream 6119 847966 ~ 865503 (+)
CI01000019_00809471_00828531 NA coding upstream 41880 808791 ~ 829742 (+)
CI01000019_00791525_00800217 NA coding upstream 71206 791219 ~ 800416 (+)
CI01000019_00786469_00789270 NA coding upstream 82053 786413 ~ 789650 (+)
CI01000019_00785792_00786324 NA coding upstream 85224 785792 ~ 786398 (+)
CI01000019_01021871_01022293 NA coding downstream 145220 1020747 ~ 1022541 (+)
CI01000019_01025556_01025846 NA coding downstream 148847 1024374 ~ 1026077 (+)
CI01000019_01067005_01080043 B4GALNT3A coding downstream 191478 1067005 ~ 1081102 (+)
CI01000019_01112433_01123179 ST8SIA1 coding downstream 236595 1112122 ~ 1124765 (+)
CI01000019_01173165_01178310 NA coding downstream 297017 1172544 ~ 1178391 (+)
G107004 NA non-coding upstream 35436 835671 ~ 836186 (+)
G107011 NA non-coding upstream 55459 789727 ~ 816163 (+)
G107066 NA non-coding upstream 89474 781673 ~ 782148 (+)
G107000 NA non-coding upstream 108496 762841 ~ 763126 (+)
G107062 NA non-coding upstream 122255 749067 ~ 749367 (+)
G107114 NA non-coding downstream 31691 907218 ~ 908301 (+)
G107219 NA non-coding downstream 163665 1039192 ~ 1039416 (+)
G107239 NA non-coding downstream 224835 1100362 ~ 1100567 (+)
G107247 NA non-coding downstream 264915 1140442 ~ 1140901 (+)
G107250 NA non-coding downstream 267950 1143477 ~ 1143775 (+)
G107312 NA other downstream 753905 1629432 ~ 1629985 (+)
G107310 NA other downstream 825218 1700745 ~ 1706990 (+)
G108050 NA other downstream 1465472 2340999 ~ 2341333 (+)
G108563 NA other downstream 2292821 3168348 ~ 3169195 (+)
G108454 NA other downstream 2336924 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) LOC103025415 iqsec3,LOC107689235 misc NC_035903.1 CM008306.1 12805971 ~ 13027498 (-)