CI01000019_01112433_01123179 (ST8SIA1)


Basic Information

Item Value
gene id CI01000019_01112433_01123179
gene name ST8SIA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 1112122 ~ 1124765 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_01112433_01123179.mRNA
ATATATATAGAGAGAGAGAGAGGGTGTGTCATGAAACATTACTTGAAGGAACCCGTTTGGACAGTGGACGCCGAGATGTTTTATTTGAATATTCTTTTGCTTACATGCTTTCCATTTATGCCTGCTTTAATTTTTGTCGTAAAATTAGTTTGTGTAATTGCACAGGAAAATTTCTGCTAAATAAAAGACTTCAACAATGTGTGCTTCAACAATGCGTCAATTAGAAAGGACATTTTCACAATCCCTTTTTTTTTTTTTTTTTTTTCTTGTTTGGCAGGAAGCTGCTGACAGAATGCTGTGATCCAAAGAGGATGTTCGCTGTTACTAAGGAGAACTCACCAATAGGCAAAGTCTTGTGGTATGATGGGGAGATCTACCATTACCACACGGTCAACAATGAAACCTACCCTTTCTTTGTTCAGGATACACCATTGCAGCTTCCTCTAAAGAAGTGTTCGGTTGTGGGCAATGGAGGGGTCCTGAAACACAGTGGCTGTGGAAACGAAATTGACCAAGCTGACTTTATCATGAGATGTAATCTTCCTCCTCTGTCCAAAGAGTACACCGCTGATGTTGGTACTAGAACACACCTTGTGAGCGCAAATCCCAGCATTATTGAAAAGAGCTTTCAGAACCTCCTTTGGTCCCGCAAATCCTTCGTAGAGAGCATGAAGGCATATGGTTCCAGCTACATCTACATACCAGCATTCTCTATGAAGCCCGGCACTGACCCCTCCCTGCGGGCATACCATGCCCTTGCAGACTCTGCCTCCAACCAGACTGTCCTCTTTGCTAACCCAGACTTTCTTAAAAATGTCGGTCGATTCTGGAAGAACCACGGCGTCCATGGTAAACGGCTATCCACGGGGTTGTTCCTGGTGAGCCTTGCCCTTGGCTTGTGTGAAGAGGTAACCACTTACGGTTTTTGGCCATTTGCGGTGGGGCTGGATGAGCGACCGGTCAGCCACCACTATTATGACAACATTCTCCCATCCTCGAGATTTCACGCCATGCCTGAGGAGTTCCTGCAACTCTGGCACTTGCACAAGAGCGGCACGCTGCGCATGCGGGTTGGCTATTGTGCGAAAGAGGGGCAGGAGCCGAAGAGGGAAAACTAAGTGGAAGTGTTGCCAGGGGCAACTCATCTTATCCCCACAGGAACAGGACGGCAATCCTGTGATTAGCATGATAATACTGTGGGTTGTGAGGTGATGCCCCACCCCCAAAGCTGGGCCTCTCTTTGGTGTCTATATGCTTGACCCTCAACTGCTACCAAGACCCTACCCTTTTGTTGCCAAGGGACTGTTGAAAAAGACTTGCATGTGTACCCATCCTCATGTATGCACTCACTGGAAGCTTGTTTTGACTTTCTGTAGAAGTACCGGGGGTGATGGGGCGGCTCAGGTGTCATGTGACCTATATAAACTGCATCTGCCAGCAGTTGGACCCTTGAACCTAGAGGAGCTATTTGTTCACTTCATGTAAAAATAGGGGAAGAGGCTGCTTCAATCAATGTCTTAAGAACTTTTAAATGGGAAATCAGAAAACGAGAGCAAAGTTTTGATCATTTGGCATATTTTTATTCATTTTGTCTTGAATACTGATTTTTTTGGGGAGTTTTGAGGAAGTAGAAAAAGGAATAATGTGAAAATCGTTCTTGCAGTGTTTGAACATATAAAAATCAGTGTACAAACAGGTTTAGCCTGTAAAAGGGAAAAAGGCATTGAATGTAAATGCTTTTACAGCCACCGTTTAAAAACTCGTTTCATAAATTTGAGACCGGTTTAAAGTGAAGGCTGCAGTTCATGTATTATTGTGAGTATGTTTTTACTTTTATTTATTATTAATGTTCAATGAAACGGGGCCTCTACCGAGAAACAAAATGTCGCACATGCAGTGTTTTGTCATGTTTGGATTGGGAAGTCTTGCGTTGAGTGACCATGTCCAGTTTGAAGACTTCCACAAAAACGGATGATAGACTCTTGAGGACCAAATTCCGTAGAAGAGGGAGTGAATGGTTTGTGTGCCAACGAAAGTAGTGCGATAGTGTTCTGGGTGACTCCTGTGGCAGCATCTTTAATTATCATTTGTGTTATTTTGTATGTGTTTGAGAATCAGTCATTTGATGGTACACAGTGGTGGAATGGGGCACCAATCATACGATAAACATTTTTTTTTTGCCTGCTAAGGTGCTGGACACCTGGTTTGGAACGTGTAAATACTCAGTCACCAGTTTCGTTACTGTTTCCACAAGAATCTTGGGTTCTTTGAATGTAGTGGCAGCCATTTTGTGGTCTGCCCAGTAACTGGTTTCCTTGACTTATTATTAGGTGTGTGCGTGCGTGTGCGTGCGTGTGTGCGTGTGTGTGTGTGTGTTAAAATGCACACAGGAAATTAGGTTTAAATCTTGTAGGTGCTAGCTATACCACATGCACTCCAGCTTAGTTTTAATATAGCATCACTGACAGTTTTAATAGGTATGAGTGGTAGGAAAGATGCACTATAATGTTGACTTAAGCCAGAAACCTCAGTACTTAAAGGGATTATTTGCCCAAAAAATGAAAATTCTTTCATCAGTTATGATTACTTTTGTTTATCTTTGAAACTTATCTTTTGAAAATTTCTTGATTTCTAAAAAAAACCTGGGAGATTCCCTCCACTGAAATTCCATTCAACCATTAACGCTTCAAACACGGCAAATATA

Function

symbol description
st8sia1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K03371 SIAT8A; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8A)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_01112433_01123179.mRNA True 2704 mRNA 0.43 4 1112122 1124765

Neighbor

gene id symbol gene type direction distance location
CI01000019_01067005_01080043 B4GALNT3A coding upstream 31020 1067005 ~ 1081102 (+)
CI01000019_01025556_01025846 NA coding upstream 86045 1024374 ~ 1026077 (+)
CI01000019_01021871_01022293 NA coding upstream 89581 1020747 ~ 1022541 (+)
CI01000019_00871622_00875254 NA coding upstream 236595 869371 ~ 878017 (+)
CI01000019_00848936_00865021 NA coding upstream 246619 847966 ~ 865503 (+)
CI01000019_01173165_01178310 NA coding downstream 47779 1172544 ~ 1178391 (+)
CI01000019_01185485_01189927 NA coding downstream 60720 1185485 ~ 1190732 (+)
CI01000019_01224023_01232161 USP44 coding downstream 99258 1224023 ~ 1232942 (+)
CI01000019_01281704_01306187 FGD6 coding downstream 155549 1280314 ~ 1306211 (+)
CI01000019_01310939_01319204 NR2C1 coding downstream 186174 1310939 ~ 1319586 (+)
G107239 NA non-coding upstream 11555 1100362 ~ 1100567 (+)
G107219 NA non-coding upstream 72706 1039192 ~ 1039416 (+)
G107114 NA non-coding upstream 203821 907218 ~ 908301 (+)
G107004 NA non-coding upstream 275936 835671 ~ 836186 (+)
G107247 NA non-coding downstream 15677 1140442 ~ 1140901 (+)
G107250 NA non-coding downstream 18712 1143477 ~ 1143775 (+)
G107257 NA non-coding downstream 24404 1149169 ~ 1149449 (+)
G107259 NA non-coding downstream 26323 1151088 ~ 1151311 (+)
G107263 NA non-coding downstream 32015 1156780 ~ 1157358 (+)
G107312 NA other downstream 504667 1629432 ~ 1629985 (+)
G107310 NA other downstream 575980 1700745 ~ 1706990 (+)
G108050 NA other downstream 1216234 2340999 ~ 2341333 (+)
G108563 NA other downstream 2043583 3168348 ~ 3169195 (+)
G108454 NA other downstream 2087686 3212451 ~ 3234285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location