G117490


Basic Information

Item Value
gene id G117490
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3991656 ~ 4102768 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU133508
ATTGTCTTCTGAGGCGAAGAGGTCGACCTCTGCCCTCCCGAAGACATCCCAAATTTTCTGAACCGTGCGGGGGTGGAGCGACCATTCCTCCGAGGGAAGGTTGTTCCGGGACAACATGTCCGCCCCTGTGTTCAGTACGCCCTGTATATGTGCTGCTCTCAGTGAGAGCAGGTTTTGTTGGGCCCACTCTAGGATGGTTTTCGCTAGAGTGAAGAGGGGCTTTGAAGAGAGCCTGCCCTGGTGATTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133508 True 249 lncRNA 0.55 2 3991656 4102768

Neighbor

gene id symbol gene type direction distance location
CI01000021_03793387_03846383 NA coding upstream 145273 3793387 ~ 3846383 (+)
CI01000021_03640760_03747887 LAMA5 coding upstream 243769 3640760 ~ 3747887 (+)
CI01000021_03617827_03624592 MAPRE1B, MAPRE1 coding upstream 366752 3617827 ~ 3624904 (+)
CI01000021_03594629_03615777 PRKCBP1L coding upstream 375327 3594629 ~ 3616329 (+)
CI01000021_03562381_03570309 NA coding upstream 420384 3562287 ~ 3571272 (+)
CI01000021_04219242_04237829 NA coding downstream 116419 4219187 ~ 4238007 (+)
CI01000021_04259458_04263656 NA coding downstream 156389 4259157 ~ 4264106 (+)
CI01000021_04436103_04476829 OPRL1 coding downstream 333059 4435827 ~ 4477311 (+)
CI01000021_04576127_04585164 NA coding downstream 473359 4576127 ~ 4585311 (+)
CI01000021_04614553_04621970 NA coding downstream 510997 4613765 ~ 4622428 (+)
G117471 NA non-coding upstream 59966 3927839 ~ 3931690 (+)
G117431 NA non-coding upstream 65055 3914686 ~ 3926601 (+)
G117329 NA non-coding upstream 305387 3684236 ~ 3686269 (+)
G117366 NA non-coding upstream 454274 3536369 ~ 3537382 (+)
G117365 NA non-coding upstream 478655 3512712 ~ 3513001 (+)
G117556 NA non-coding downstream 41733 4144501 ~ 4144835 (+)
G117564 NA non-coding downstream 60567 4163335 ~ 4163560 (+)
G117566 NA non-coding downstream 61567 4164335 ~ 4164600 (+)
G117568 NA non-coding downstream 68198 4170966 ~ 4171179 (+)
G117580 NA non-coding downstream 101147 4203915 ~ 4204151 (+)
G117484 NA other upstream 33904 3956146 ~ 3957752 (+)
G117202 NA other upstream 663423 3269144 ~ 3328233 (+)
G117237 NA other upstream 748292 3237854 ~ 3243364 (+)
G116236 NA other upstream 1694461 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 2657247 1331665 ~ 1333951 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 739965 4886337 ~ 4893474 (+)
G119701 NA other downstream 2697376 6800144 ~ 6860606 (+)

Expression


Co-expression Network