CI01000021_03562381_03570309


Basic Information

Item Value
gene id CI01000021_03562381_03570309
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3562287 ~ 3571272 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_03562381_03570309.mRNA
ATATATGTGTGCTGGGTTTTAATGCAGGTCTCATGTAGTTATGGACTATAATCTGAAAACTCTAAGAAATTACGAACATCTTGAACCGGATAACATGGAGGAACATGAAGATCCAAGAGATTACTGCTACGGTGGGTATCACCCAGTCGAGGTGGGAGATGTGTTTAATAAGAGATACAAGGTTCTGTCAAAGCTGGGTTGGGGTTATTTCTCTACTGTATGGCTCTGCATTGACCTCAGGTCAGGCAGGCATGTGGCGGTGAAGGTGTTAAAGAGCGGAGCTGGATTCACTCAAGCTGGCCAAGATGAACTGACATTACTGCGATGTGCCAGTGGTCCCACAGCCCGTAACCCTCTTAAAAGACGTATAGTGCAATTACTGGATGAGTTTAAGATAGCTGATATTTGTTTGGTGTTGGAGCTGCTGGGGCCGGACTTGCGCTGTTGGCAGGTGTGTTTTGGTAGTCCAGGTCTCTCTCTCACCTGTGTTAAACACGTCATCACTCAGGTGCTTGAAGGTCTGGAGTATCTTCACCAACACTGTAAGATCATTCACACAGACATCAAGCCCGAGAACATACTGCTGTGTCTCACACCGCAGTCCCCACCTCATCCTCCAGGGGGCACGCTACAAATGCACACTTCAGCTATTAAAACCACAATACTCCAGGATCCTGGAGCAGCTGGAAAACCTGGAAACTTGGATAATATAACGGTGAAGATTGCAGACCTCGGAAGCTCATGTTGGGTGTACAAACACTTCTGTCAAGAGATCCAGACCAGACAGTATCGCTCTCTGGAGGTTCTTCTAGGCTCTGAATATGGCCCTCCAGCTGACATCTGGAGTGTGGCCTGCTTGGCATTTGAGCTTGTCACCGGTGATTCTTTATTTGAACCCAAAGCAGGGCAGAATTTCTCCTTAGAGGAAGACCACCTGGCTCATATTATTGAGCTCCTGGGTAAGATCCCAGTGTCAGTGGCTCTGTCTGGGAAATATTCCTATGAGTATTTCAACCGCAAGGGTGACCTGCGGCGAATTGTTGTCCTCCGTCCATGGGGGCTGTATGAAGTGCTGGTGGAGAAATACCACTTTCTCCTAAGAGAGGCGTCGCTTTTCTCTGATTTCCTTTTGCAAATGTTGAACTTCCTGCCAGAGCGGAGGGCCACAGCAGCTCAGTGTCTCAAACATCCCTGGCTAAAACTCTGAGCCTTTCTGGCTTCTTATACTTGACACTCTATTGTGCACTAGGTCACCATAAGATTTTCTGTCCATGTTCATGCATGTTTTCTGTATGCAGAATGAAAAGGTCATGCTTTCATTTTTCCAAATGGGGCTTAAATGAATATTTCATGCAAAAATTACAATTCGGTCATCATTTATTCATTCTTATGTTGTTCCAAACCTGTATGACAGTCTTTCCTCTATGGAACACAAAGGAAATGAAAGAACGTCATTTTTGTCTGTGTATTGTCTCTTTAAATAAGGATGGCTAGGTCTGTAACATGTGACCCTGGACCACAAACCAGTCATAAGGGTCAATGTTTTGAAATTGAGATTTATATATAATCTGAAAGCTGAATAAATAAGCTTTCTATAGGACAATATTTGGTCGAGATACAACTATTTGAAAATCTGGAATCTGATTATTGAGAAAATCACCTTTAAAGTTGTTCAAATGAAGTCCTTAGCAATGCATATTCACTCGCAAAAATTATTTTTTGATATATTTACAGTAAGAAATTTACAAAATATCTTCATGGAACATGATCTTTACTTAATATCCTAATGATTTTGGCATAAAAGAAAAATCAATAATTTTGACCCATACAATGAATTGTTGGCTATTGCTACAAATATACCCGTGTGACTTTTGTGGTCCAGGGTCATATATGTGAACAGCACAGCTTGCATAGCAAATGCATTTAAATCTATGAAATATGTTTAACTGACTGATACATACATTCCACTCTTAAATAAGCCCTGTAGTGCTTCTGTATCAGAGACTAAAAAGCTATGATGACCATGACTAATCAGTTCAATTTCTTGAGTAATACTGGTGCTCTGAGATGTTAGTGTGTTCTGAGCAGAGATGCTAAACAAGCCATTTGTTTTGGTAATGAACATGTAAAAAATGAACCGTGCTATGTGTTTGTGATGCCATATAGATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_03562381_03570309.mRNA True 2170 mRNA 0.41 11 3562287 3571272

Neighbor

gene id symbol gene type direction distance location
CI01000021_03510302_03551418 PLXNB1A coding upstream 10715 3510248 ~ 3551572 (+)
CI01000021_03428718_03432817 NA coding upstream 129185 3428576 ~ 3433102 (+)
CI01000021_03382666_03386768 S1, KRT8, E3, KRT4 coding upstream 175387 3380769 ~ 3386900 (+)
CI01000021_03349081_03350266 NA coding upstream 211107 3349081 ~ 3351180 (+)
CI01000021_03164405_03179692 FOXP1A coding upstream 382338 3164405 ~ 3179949 (+)
CI01000021_03594629_03615777 PRKCBP1L coding downstream 23357 3594629 ~ 3616329 (+)
CI01000021_03617827_03624592 MAPRE1B, MAPRE1 coding downstream 46555 3617827 ~ 3624904 (+)
CI01000021_03640760_03747887 LAMA5 coding downstream 69488 3640760 ~ 3747887 (+)
CI01000021_03793387_03846383 NA coding downstream 222115 3793387 ~ 3846383 (+)
CI01000021_04087145_04091630 NA coding downstream 514702 4085974 ~ 4091826 (+)
G117366 NA non-coding upstream 24905 3536369 ~ 3537382 (+)
G117365 NA non-coding upstream 49286 3512712 ~ 3513001 (+)
G117327 NA non-coding upstream 83888 3451215 ~ 3478399 (+)
G117346 NA non-coding upstream 144672 3411898 ~ 3417615 (+)
G117308 NA non-coding upstream 185315 3376722 ~ 3376972 (+)
G117329 NA non-coding downstream 112964 3684236 ~ 3686269 (+)
G117431 NA non-coding downstream 343414 3914686 ~ 3926601 (+)
G117471 NA non-coding downstream 356567 3927839 ~ 3931690 (+)
G117490 NA non-coding downstream 420384 3991656 ~ 4102768 (+)
G117492 NA non-coding downstream 427751 3999023 ~ 4001123 (+)
G117202 NA other upstream 234054 3269144 ~ 3328233 (+)
G117237 NA other upstream 318923 3237854 ~ 3243364 (+)
G116236 NA other upstream 1265092 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 2227878 1331665 ~ 1333951 (+)
G115519 NA other upstream 3078323 480530 ~ 483964 (+)
G117484 NA other downstream 384874 3956146 ~ 3957752 (+)
G117493 NA other downstream 461728 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 1271461 4886337 ~ 4893474 (+)
G119701 NA other downstream 3228872 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location