CI01000021_03382666_03386768 (S1, KRT8, E3, KRT4)


Basic Information

Item Value
gene id CI01000021_03382666_03386768
gene name S1, KRT8, E3, KRT4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3380769 ~ 3386900 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_03382666_03386768.mRNA
CCATAAATGTGTGGGAGTTGATTAGACTGTTATCTTCAGTCATCTATTTTCATAATAATAAATAAAGATCTTCTTGTTAAATGTTTGGATATGGTGTAATGCACAATTATTATCGGAGCATGTCTGAAAAGAAGGCCGTATTATATCTGCATGGAAAAAGTGAGCCTGATCAGGTTTTCCCTGGTTCCTCTCAAAAACAATAGCCGGGATTCTGTAGTCTTAGGAAAAGCCTTTATGATGCCTAAAGATATCATGACTCTGTGACTGAAAACCAGTGAAGAAGATGAAAGCAAAGGGGATCTAAAGATACTGACAATTAAATCAGTATCTTTTCTACATGCTTTGGTATTAAGCAGTTCCAGTAATGAAAGACAGCAGACATTGTTTGAGGTGCCAAGATTTTAGTCACTCAGAAAGAAAACAATTGACACGTGCACCACAGCATGTCAGTCCCTATCAATAGATACTGCTTGGGAGATTGAAGTTGTTATCTGACTTAATTAACATTATTGACTTCAGTAATGAGGCCTTTTAAATGTATCAGCACGTCACGCCTAATGACCCAACCATTGAAACACCTGGTGATGAAATCAGTTTGGTCAATGGAAAGGACTGTGCTGGGGTAACAGGTCAAGGCAGATCTAGTTTTGTTTGAATAGATACTGTAATGCTTAGAGAATTCAGTGCTTTGGTGTGGTCATGTAGAAGCTTTTGAATATGCAATGGCTAAAATGAATCAAGACAAGACACAGCAAAAAGTCACATAACTGGAAAGGTACAGTGCAAAACCATGCAGAGAAAGTGCCATTTTAAACCCACATAAACAGATAAACAGAAACTAAACTGGTGAATGCCCAGCCTTATCTCATGGTTTCCCTAGTATCATTAAAGTCACAGTACTTGCCAAAACTCAAGCTGAATGTAGAACGTTCCTCAACTTAATCCATGTTTTAAAAAGAAGAAGAAAAAAAAAATCCTTGGGCTATTCAACTATAAACGCAGCATGACCATAAACCTGGATAACTTTAGGAGACCTCTGGATTCCAGAAGGCTCCAGGACCGTAGGGGGTAGATTTTAAAACCTTATGATTATTGCCTTCTTCAAACTGAGAAACTCTTGGTGGCCTCCATGATGTGGGGCAGTTTCAACTAGCTTAATTTCAGTAGCTTAGTTTCAACTTTGCTTAATTATGTCTGTCAAGTATTACAGTACATACTTAATTCCCACCATCAACTTTTCATTTGCTGCTGTAGGTATTGCTAAAGCACAGCTGGATGTCACATGTTCCACTTTGTACAGCTTCCAGTGTTGAGAGATAAAACATGTCAGCTGTCACAGGGTTAGAGTGAAATTTAAAGCCTTCCAGATGTCTTATTTGTATAGGCAAATAGATGCAAGCTATTTTAGTGCGTCACATTGATAGATGCTGGTGCTGCTTTAAAGTACTTCAACTCTCATGTTTAATATTATTGACATATTGTGTGTTTACACTCTGTATTTTATGTGACCCATTCTTTTACAAAACAAATAATATATATTTTAAAAAGAAAAGGGTCAAATATAGAAATCATTGTATTTTTTTTTTAAGCCCTTAAACATTCTCAGAAAATATCTGTTTCTAGTCATATTGAATTATCACAACATCTAAGTACTGGATGGAATAGGAATGCAGAGATAGGAGTATTGAATTTCAGCCTACACCCACCCTGGTAATGACTGGCCAGTCTAAGCCAGTTTGACTCCTCCCACTCAGCCACACATATAGTGGGAGGCAGAGCCTGCTGCTCTCTCTATCTGCTCGAGTTTCTCCAGCAAGCAGACAAGGCTCACATCTGCTGCTCTCGCACCCCCTAGCTACAGGTCATTCTCTACCAGTACAAGACACACATCAGCAGGATGTCGTTCACCAAGAAAACCAGCTACACCGTGAAGTCCTCCTCCTCTGGATCTGTCCCACGCAGCTTTAGCAGTATGTCTTACTCCGGCCCCAGCGCCAGCCGACAGAGCTACAGTGTGCGCAGCTCTTATGGAGGTGCCAATCGTGGCATGGGAGCTGGAATGGGAGGTGGTGGCTTCATCAGCAGCTCTTCAGCCTATGGTCTTGGCATGGGAATGGGTATGGGTTCTGGCGCCGTGGCACCCATTCAAGCAGTCACCGTCAACAAGAGCCTCCTGGCACCTCTGAACCTGGAGATCGACCCCAACATCCAGATTGTCCGCACCCAAGAGAAAGAGCAAATCAAGACCCTCAACAACCGCTTCGCTTCCTTCATTGATAAGGTACGTTTCCTGGAGCAACAGAACAAGATGCTGGAGACAAAATGGAGCCTCCTTCAGAACCAGACAGCCACGCGCTCCAACATTGATGCCATGTTCGAGGCCTACATCAGCAACCTGCGCAGACAGCTTGACAGCCTTGGCAATGACAAAATGAAGCTGGAGGCTGACCTTCATAACATGCAAGGTCTCGTTGAGGACTTCAAAAACAAGTATGAGGATGAGATCAACAAACGCACAGAGTGTGAGAACGAGTTTGTGCTCATCAAGAAGGATGTTGACGAGGCCTACATGAATAAGGTTGAGCTGGAGGCCAAACTGGAAAGCCTTACTGATGAGATCAACTTCCTCAGGCAGATCTTTGAGGAGGAGATCCGTGAGCTGCAGTCTCAGATTAAGGACACCTCAGTTGTTGTGGAGATGGACAACAGCAGGAATCTCGACATGGACGCCATCGTCGCTGAGGTCCGCGCTCAGTACGAAGACATCGCTAACCGAAGCCGGGCTGAGGCTGAGATGTGGTACAAGAGCAAGTACGAGGAGATGCAGACATCTGCAACCAAATATGGTGACGACCTTAGATCAACAAAGACAGAGATCGCTGATCTTAACCGCATGATTCAGAGACTGCAGTCCGAGATCGATGCCGTGAAAGGACAGCGTGCCAATCTGGAGAACCAGATTGCAGAGGCAGAGGAACGTGGCGAGATGGCCGTGAGAGACGCCAAGGCCCGCGTTAAGGACCTGGAGGATGCCCTGCAGAGAGCCAAGCAGGACATGGCACGCCAGATTAGGGAATATCAGGACCTGATGAATGTCAAACTCGCCCTGGACATTGAAATCGCCACTTACAGAAAACTCCTTGAAGGAGAGGAGGACAGACTGGCAAGTGGAATCCAGTCCATCAATATCTCAAAACAGAGCACGAGCTATGGGGGTTATCCCATGGAAAGTGCAAGCAGCGGCTACAGCAGCTACTCTAGCGGTTATTCCAGTGGTTTGTCCGGCGGATACGGTGGCGGCTACAGCTCTGGTGGTGGCTACAGCTCTGGTGGTGGCTACAGCTCTGGTGGCGGCTACAGCTCTGGCAGCGGCTATGGCGAAAGTATCACTCAGACCAAGAAGAGTGTTGTGATCAAGATGATCGAGACCAAGGATGGCAAAGTTGTGTCCGAGTCCTCCGAGGTCGTCCAAGATTGAGAGAGTCCCCTTCCCCAATTCTGTCCTCTAAACCTCACGCCTCTTATGCATTCCTGATCTTCCCTCTCAACCATTATGACTGCGGTCCAAGGCGCTAGACAGGAATGCAGTCATAAACCAGGTTGTAAAGCA

Function

symbol description
krt4 Predicted to be located in keratin filament. Is expressed in several structures, including EVL; ectoderm; endocrine system; integument; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including Meesmann corneal dystrophy 2; epidermolytic hyperkeratosis; hereditary mucosal leukokeratosis; ichthyosis (multiple); and palmoplantar keratosis (multiple). Orthologous to several human genes including KRT8 (keratin 8).
krt8 Predicted to be located in cytoplasm. Is expressed in several structures, including EVL; cardiovascular system; integument; pectoral fin; and sensory system. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to several human genes including KRT8 (keratin 8).
s1 SARS coronavirus spike protein S1; Mammalian orthoreovirus 3 outer capsid protein sigma-1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_03382666_03386768.mRNA True 3610 mRNA 0.45 9 3380769 3386900

Neighbor

gene id symbol gene type direction distance location
CI01000021_03349081_03350266 NA coding upstream 29589 3349081 ~ 3351180 (+)
CI01000021_03164405_03179692 FOXP1A coding upstream 200820 3164405 ~ 3179949 (+)
CI01000021_03119361_03125084 EIF4E3 coding upstream 253988 3119361 ~ 3126781 (+)
CI01000021_03101146_03115161 RYBPA coding upstream 265301 3100953 ~ 3115468 (+)
CI01000021_03044076_03086657 NA coding upstream 294112 3044076 ~ 3086657 (+)
CI01000021_03428718_03432817 NA coding downstream 41676 3428576 ~ 3433102 (+)
CI01000021_03510302_03551418 PLXNB1A coding downstream 123348 3510248 ~ 3551572 (+)
CI01000021_03562381_03570309 NA coding downstream 175387 3562287 ~ 3571272 (+)
CI01000021_03594629_03615777 PRKCBP1L coding downstream 207729 3594629 ~ 3616329 (+)
CI01000021_03617827_03624592 MAPRE1B, MAPRE1 coding downstream 230927 3617827 ~ 3624904 (+)
G117308 NA non-coding upstream 3797 3376722 ~ 3376972 (+)
G117306 NA non-coding upstream 5458 3375046 ~ 3375311 (+)
G117303 NA non-coding upstream 12244 3368314 ~ 3368525 (+)
G117202 NA non-coding upstream 55899 3269144 ~ 3328233 (+)
G117211 NA non-coding upstream 57397 3320597 ~ 3323372 (+)
G117346 NA non-coding downstream 24998 3411898 ~ 3417615 (+)
G117327 NA non-coding downstream 64315 3451215 ~ 3478399 (+)
G117365 NA non-coding downstream 125812 3512712 ~ 3513001 (+)
G117366 NA non-coding downstream 149469 3536369 ~ 3537382 (+)
G117329 NA non-coding downstream 297336 3684236 ~ 3686269 (+)
G117237 NA other upstream 137405 3237854 ~ 3243364 (+)
G116236 NA other upstream 1083574 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 2046360 1331665 ~ 1333951 (+)
G115519 NA other upstream 2896805 480530 ~ 483964 (+)
G117484 NA other downstream 569246 3956146 ~ 3957752 (+)
G117493 NA other downstream 646100 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 1455833 4886337 ~ 4893474 (+)
G119701 NA other downstream 3413244 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding CM030126.1 CM030126.1 10764016 ~ 10771654 (-)