CI01000021_03428718_03432817


Basic Information

Item Value
gene id CI01000021_03428718_03432817
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3428576 ~ 3433102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_03428718_03432817.mRNA
GTATAAAAGCCCTTGCACTCCTTGGAGAAGGCACTCAGAGGGATTTAACTTTCCTCTTAGTGAGCTCACCTGCTCTGGATCTCTCTGTCTCCTTCTGCTCTTTCTCTAACTGATCCTCATCCCCTCATAGACGACAGCAGCCATGACTTCGATTAAAACAGTACAGTACAGCAGCGGTGGAAGCTTGAGCGGCGGCTTTGGTGGTGGTGGAGGTATTAGAAAAAGCTTCTCTAGCATGTCTGCCAGTGCAGCTCCCATTGGCAGCAGGATGAGCTCTGTGTCATTCCGTCGCTCCGGCGGTGGTGTCAACCAGAGCCTCCTAGCTCCATTGAACCTAGACATCGACCCCAACATCCAAGCCGTCCGCACCCAGGAGAAAGAGCAGATCAAGAACCTCAACAACCGCTTTGCTTCCTTCATTGACAAGGTTCTGCTCATTAAATATTTCACAGCCAGTCACTTGCAGCCAGAAATCCTGCTAGTGTCAGATTCAGTAGAACATGAGGGTGAGTTTGGAAACCCAAGCCAGGTGCGCTTCCTAGAGCAGCAGAACAAAGTACTTGAGACAAAATGGAGTTTACTGCAGGACCAGACTACCACCCGCTCCAACATCGACGCCATGTTCGAGGCCTACATCGCCAACCTGCGCAGACAGCTTGATGGACTTGGTAATGAGAAGATGAAGCTGGAAGGAGAGATGAAGAACATGCAGAATTTGGTGGAGGACTTCAAGAACAAATATGAGGATGAAATCAACAAGCGTGCCGCAGTGGAAAACGAATTTGTCCTGCTCAAGAAGGATGTTGACGCTGCTTACATGAACAAGGTTGAGCTTGAGGCCAAGGTTGATTCCCTTCAAGATGAAATCAACTTCCTTAGAGCCATCTTTGAGGAGGAGCTGCGCGAACTCCAGGGACAGATCAAAGACACATCAGTCATTGTGGAAATGGACAACAGTCGCAACCTGGACATGGATTCCATCGTTGCTGAGGTCCGTGCTCAGTATGAGGACATTGCCAACCGCAGCCGCGCTGAGGCTGAGTCGTGGTACAAACAGAAGTTCGAGGAGATGCAGTCATCTGCCGGCAAATATGGAGATGACCTTCGCAACACCAAGGCCGAGATTGCTGAGCTCAACCGCATGATCAGCAGACTTCAGAATGAAATTGAATCTGTCAAGGGACAACGTGCCAACCTGGAAGCTCAGATCGCTGAGGCTGAGGAGCGTGGAGAACTGGCAGTGAAGGATGCCAAGCTCCGCATTAAGGAACTGGAGGAGGCCCTGCAAAGAGCAAAGCAGGACATGGCGCGCCAGGTGCGTGAGTACCAGGAACTCATGAATGTCAAACTGGCCTTGGACATTGAGATCGCAACCTACAGGAAGCTTCTGGAAGGAGAGGAGTCCAGAGTACAAATTGTCCTTAAGGGGATGCACTATTGGAAAAGAGCTAATAAGGGAGACAAAACATGAAGCTCAAGGTGAATAGCTTTTGTTGCTCTGTGTTACAACATGTAAGTATTAAACGCAAACAATTGCTTATTAACTGACAAAATCCTTGTCACTACAACCAGCATTGTTAATGCTTCAGCTGCATTATAGTGCAACAAAAGCTACTCATTTGAGACTTTACTTCCCTCAGAGAGGAGTAACTTTTACTCTTTTCTTTCCCTGATTTTGGATGATGGGCTGATGAGCTGTTCTGTCAAAATTGTTGTATTCATCAAATCATGAACCATGTACCACATGGAAACATCA

Function

GO: NA

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_03428718_03432817.mRNA True 1756 mRNA 0.48 11 3428576 3433102

Neighbor

gene id symbol gene type direction distance location
CI01000021_03382666_03386768 S1, KRT8, E3, KRT4 coding upstream 41676 3380769 ~ 3386900 (+)
CI01000021_03349081_03350266 NA coding upstream 77396 3349081 ~ 3351180 (+)
CI01000021_03164405_03179692 FOXP1A coding upstream 248627 3164405 ~ 3179949 (+)
CI01000021_03119361_03125084 EIF4E3 coding upstream 301795 3119361 ~ 3126781 (+)
CI01000021_03101146_03115161 RYBPA coding upstream 313108 3100953 ~ 3115468 (+)
CI01000021_03510302_03551418 PLXNB1A coding downstream 77146 3510248 ~ 3551572 (+)
CI01000021_03562381_03570309 NA coding downstream 129185 3562287 ~ 3571272 (+)
CI01000021_03594629_03615777 PRKCBP1L coding downstream 161527 3594629 ~ 3616329 (+)
CI01000021_03617827_03624592 MAPRE1B, MAPRE1 coding downstream 184725 3617827 ~ 3624904 (+)
CI01000021_03640760_03747887 LAMA5 coding downstream 207658 3640760 ~ 3747887 (+)
G117346 NA non-coding upstream 10961 3411898 ~ 3417615 (+)
G117308 NA non-coding upstream 51604 3376722 ~ 3376972 (+)
G117306 NA non-coding upstream 53265 3375046 ~ 3375311 (+)
G117303 NA non-coding upstream 60051 3368314 ~ 3368525 (+)
G117211 NA non-coding upstream 105204 3320597 ~ 3323372 (+)
G117327 NA non-coding downstream 18113 3451215 ~ 3478399 (+)
G117365 NA non-coding downstream 79610 3512712 ~ 3513001 (+)
G117366 NA non-coding downstream 103267 3536369 ~ 3537382 (+)
G117329 NA non-coding downstream 251134 3684236 ~ 3686269 (+)
G117431 NA non-coding downstream 481584 3914686 ~ 3926601 (+)
G117202 NA other upstream 100343 3269144 ~ 3328233 (+)
G117237 NA other upstream 185212 3237854 ~ 3243364 (+)
G116236 NA other upstream 1131381 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 2094167 1331665 ~ 1333951 (+)
G115519 NA other upstream 2944612 480530 ~ 483964 (+)
G117484 NA other downstream 523044 3956146 ~ 3957752 (+)
G117493 NA other downstream 599898 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 1409631 4886337 ~ 4893474 (+)
G119701 NA other downstream 3367042 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location