CI01000021_03510302_03551418 (PLXNB1A)


Basic Information

Item Value
gene id CI01000021_03510302_03551418
gene name PLXNB1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3510248 ~ 3551572 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_03510302_03551418.mRNA
CTATAAAACTGACTCATGTCTTATGCGATCAGTGTTTTTGCAGTGCAGTGTGGGATGGCCCTCATCTTGACCCTGCTTCAGTCCCTCATCCTGGGTGTTCTGGGGGTCCACAACAGTTACTCTCGCTTCTCTTCCAACAACACGGTCTTCCAGCACCTGGCATTGCACCCTGACCCCAGCGTAGGAACGGTCTACGTGGGGGCTCGGGACCATCTGTTCCAGCTGGCTGGCCTTGATGGCCTCCGTCTTGAAGTGGATGAAAGAACCGGCCCAGTGAGAGACAGCAAGGACTGTCTGCCTCCGGTAACCCTAGAGAACTGCCCTCAGGCTGGGCTCGTTAGCAACCACAACAAGCTCCTGTTGGTGGATCCATACTCCCTCCAGCTCATCACCTGTGGCAGCGTACACCAGGGCACCTGCCAGAAACGCAGCCTAGCCAATGTGAAGGAAGTCCTCTTCTCTGCCGAGAGACCTGTAGATACACAGTATGTGGCGGCTAATGACCCTACGACATCAACTGTTGGGCTTGTGGTGCGACCGCAAGACAAGGATCCAGTCCTGTATGTGGGCCGAGGCTACACCAGCAGTCACCCGCCGGTCTCCACTCGCCAACTTTTGACAGAGCCAGTGTTTTCCTACGAGGAAACTGCCAAACTTGCTGTTGCCGGACGCCTCTCAGAGTACGATCACAATTTTGTCGCAACCTTTGCGCGACGCAACCACGTCTACTTTTTATTCTATAGACGCGACCTGAAAGCTGCCTCACGGGAATATCGTACGTATGTGGCACGGGTTTGTCTGGACGATCAGGCGTATTACTCTTACGTTGAGGTACCGCTAATGTGTCGCTCAACAGGAAGGAACTACAGTTTGCTCCAGGGGGCGCAGGTGGGTGGTGAGGAATCTGGAAACTCGCAAGTTTTGATGGGAGTTTTTTCAACGGCGGTTAGTGCTGCTAATGGACCTAGTGAGGAATCGGCGTTGTGCGTGTACTCTCTGGATGAAGTGGACCGTGCTATTGATGCTACACGAGACCTGTGCTACACACAGTATGGGGAGAAAGACGGCAGCAGGGTGGCATACATTGAATACGACGTTAAATCCAACTGTGCCAACCTGCCCACAAACACCCTGAACGCTTATCCCTGTGGCTCGGACCACACCCCAAGCCCAATGGCGAGCCGGGAGCCAGTTGAAGCCAAAGCCGTATTGGAGAGCCCATCCGCCCGTCTCACTGCTGTCGCCGTTAGTGTAAAGGAGGGGCATACTATTGTTTTCTTGGGCGACTCCAAAGGCAATTTGCATAAGGTGTTCCTGGGTAACTCAGGGGAGGTGAAGAAGTACTCCATCCTTCTCATCCAACCTGGTTTGGCCATCAACAGTGACTTACTACTGGATTCCACCCATAAACACGTTTACATCATGACCAGCCATTCTGTGGAGAAGAGGCCTGTGGCAGAGTGTGACAAGCACACTGATTGCACTTCCTGTCTGGCAGTGAAAGACCCTTACTGTGGTTGGTGTGTTCTTGACGGCCGGTGTGGGATGCGTTCAGACTGTAGGCTGGGCTCAGTTGAAGGTCATTGGCTGTGGAGTTTTGATGAGCAGCAGCAATGCTTGAGAGTGGAGTCACTGAGCCAATATAACGCCAGCCTTGGAGAACAGAGACTGATCGCTGTGGATGTCCCGGGTTTGCCCAGTCTGTTAGAGGGTGACATGTACTCGTGTTTCTTTGAAGAGGCTGAAACAGCTGCTTCAGTCCAGGGCACCACAGTCACCTGTGCCACTCCTGAGGCCCACAGACTTCCACCTGTACAACAGGGAGAGGATTCTGTGTCCGTCACACTGTCCCTGCGCTTCCGGACTGTCACTGTAGCGGCCGCAGACTTCACCTTCTACGACTGCTCTGTGGTGCAGCAGCTCTCTGGCAGCAAGCCGTGTACTGGTTGTGTGAACAGCCGTTGGAAATGTAACTGGTGCATCCACCAGCATGTGTGCACTCACCGGTCCACGTGTGACCACGGTGCGATCATCTACAACCAGCTTTTCACGCTCCCCACATCTGCTCCTCAAACTATAAAAGACTTTGACGCGTACGCGTATACCACCTCAACACCCACGACAACAACCCTCTCGACCACTGAGGTTCCCATAACAACTGAAGCCATTGTCATGACTACCCCTTCAGTGACCCCTCCCACTACTCCAGAGCCCACTGCCGCCCCCACCACATCTCTGGAAACCACAACCCCACTCACCGATGCACCCACTACCCCCAACCACGTCACAACTTCCTCCATGCGCCCATCCAGTGCCACTACAGAGTCAACCTATACATTCACAGAGGCCAGAACCCTCTCGCAAAATGGCTCTTGGGTGGAGGAGCGCATCCAGGTAGGTTTACTGTCGACACCGACCCCGCAATCATATGAAGAACTTGTGGGACATTCATCGCGTGAAGAGGCCGCTGAAGTGACGCTGCCCACATTGAGAGCTGGGGAAGTGGTGACAATGGGGCCGTTGAGTGAAGCGCTGCCCTCATCTTCCTCTGAAGTGGTCACCCTCTCGCAGGCGGAGATGGATATAGATGCCCTTATAGACACGGGCATCCCTGTGTCGTCAGCCAGTGCCCCCTCTGGCGATGGTGAGGCAGGGCCTGATTCATCCGATTTCGCCCTCGCTCCAGACACTGACTACCAGTCCGACTCGGATGACCTTTTCCTCCTGGAAGAAGAGAGTTTACTGATGAGCAGAGGTTCTCACGCCTGTCCGTGTGTGGAGAGCATCCAGGGCAGCTCTCTTCTACCTGTCAATGTTGAGAGGAAGATCACTCTGGTGGGACGCAACTTACACCTCTATCAGTACTCCTACTCTGCTGTCGTGGAGGAATACAGCAGCATGATCTCGGTCAGGAGGAGGGACTCATTCCAGATGGATTACCCAGAGGACCTGCATGTGCGGCTGTATAACTGCTCCGTGGGCCGTTCGGACTGCAGCCGCTGTCACACGGCCGATCAGCAGTACGGGTGTGTGTGGTGTGAGGGGTCTCGCTCCAGCTGCGTCTACAAGAGCTCCTGCACCGACCGCATCCAGCAGACCTGCCCTGCACCTCACATACACACGATTGAGCCTCTTTCTGGTCCAGTGGAGGGCGGCACAGTGGTGACAGTGTCTGGCTCTAATCTGGGTCAGAGAGCTGAAGACATCCAGCATTCAGTCACTGTAGCAGGAGTCCCCTGCACCGTCATCCCCGACAGATACGAGGTGTCCTCCAGCATTGTTTGTGAGACCACAGCGAGTGCAGGGGAACAGAGCGGGCATGTCTCGGTGCAGGTTAGAGGTGGAGGAATCGGGCAGTCTGCCCAGCGCTTCCGTTACCAGGACCCAATGTTATTGGGAGTGTCTCCTCTGAAAGGCCCAATGTCAGGCGGCACATCACTCACCATCACGGGACGGAACCTTCTGACGGGCCGTGCCAGTGAGATCAGCATCCTGATTGGTGGCGTCCCATGTCACATTTCTCCCGAGCAGTACAACAACGAACATGTTGAATGTGTGACTGGGGTGAGTAACAGAACCAGAGAGAGTGGCGTTACAGTGCGGTTTGGTAGAGCTGAGCGCCATCTACAGGAAGTGCGCTATCATTACACCCCAGACCCCAATGTGGAGGAGCGGTGCACAGTGAACAGCTCAACTCTGATCCTGTGTCCCACTCCGGAGGTGGAGCCCGAGGCCCTGCGTGCTGCCGTCAGTGTGCATTTCCTCCTGGATAACCTCCACTTCGAGTTTGAGGCGGTCAGCGGCAGCCCCTTCAGTTATGAGCCCAATCCCGTCCTTCACACCCTTAATCAACACGACCCCAGCAAGCCCTTCCGCCACAAACCCGGCAGCATCATCTCTGTGGAGGGGGAGAATCTGGACCTGGCTATGTCTAAGGAGGAGGTGGTTGCTGTGATTGGTGATGGAGAATGTGCTGTGAAGACTCTAACCAGAAATCACCTATACTGTGAGCCTCCGACACAGCAGCCATCAGTGGCAGCGTCCAAGAAACGAGAGGCCACCGACACGCTTCCAGAGTTCACTGTGAGAATGGGGAATCTGAACTTTTCTCTGGGCCGGGTGCACTATGATTCTCAGGGCCCAGCTGCCTTCCCTCTAGAGGCCCAGGTGGGAGTCGGGGTGGGAGCCTCCATCGTGGCTCTTATCGTGCTGGTTATCGTACTCATATACAGGAGGAAAAGCAAGCAAGCACTAAGAGACTATAAAAAAGTCCAGATCCAACTGGAGAATTTGGAAACGAGTGTCCGAGACCGCTGTAAAAAGGAATTCACAGATCTGATGACTGAGATGATGGATGTGTCCAGTGATCTCATGGGATCTGGGATTCCATTCCTGGATTATCGTAAATACTCTGAGAGGATTTTCTTCCCGGGTCACCGCGAGTCTCCGCTGAGGCGGGACCTTGACGTACCCGCCTGTCGCCGGGCCACAGTGGAGCAAGGCCTGGTTCAGCTCTCGAACCTGCTCAACAGCAAACTGTTCCTCACCAAGTTCATTCACACTCTGGAAGCCCAGCGAACCTTCTCTCCAAGGGACAGGGCATATGTGGCCTCCCTCCTCACGGTGGCGCTGCACGGCAAGCTGGAGTATTTCACAGACATCCTAAAAACTCTGCTTAGTCACCTGGTGGAGCAGTACACCACTAAAAACCCCAAACTCATGCTGCGCAGGACTGAGTCTGTGGTGGAGAAGCTGTTGACTAACTGGATGTCCATTTGCCTTTACACCTTCCTCAGGGATACAGCAGGTGAGTCGTTCTACATGCTGTTCAGAGCCATAAAGCACCAGGTGGATAAAGGCCCAGTGGACGCTGTTACAGGCAAAGCCAAATACACACTCAACGACAACCGACTGCTGCGGGAAGACGTGGAGTACCGCACTCTGACTCTAAATGTTCTGGTGACCAGTGGAGGTGCTGGTGAGTCTCAGACGGTCCCCACCAAGGTTCTGGATTGTGACACCATCACACAAGTAAAGGAGAAGATTCTGGAGCAGACATGTAAGGGCATGTCATGGTCCCAAAGACCCTCCGCAGACTCTGTGCATCTGGAGTGGAGGGCGGGAATGGCTGGTCATCTGATCTTGTCGGATCAGGACTTGACGTCAGTGGTTCAGGGATCCTGGAAACGCCTCAACACTTTACAGCACTACAAGGTCCCAGATGGTGCCACAGTAACACTGGTGTCACGACAATCCAAGCAAATCCACCATGACAGCCATGACTACATACCTGGAGAGAAGACCCCGATGTTGGAGGATGGAGATGAAGGAGGAGTGAAGCAGTGGCACCTGGTGAAGGCCAACGAGGAGTCGGAGCTACCCAAGCACAGACGGGGCAGTCTGAGAGACAAAGAGCGTGAGAGAGCCAAGGCGATCCCAGAGATCTACCTCACACGCCTGCTGTCTGTGAAGGGGACACTGCAGAAGTTTGTGGACGATCTGTTCACTGTGATTCTGAGCACCAGTCGGCCGGTTCCTCTGGCTGTGAAATATTTCTTTGATCTGTTGGATGACCAGGCCACACAGCACAACATTACAGACCCAGAGACAATCCACATATGGAAAACAAACAGCTTGCCGCTGAGATTCTGGATCAATATCCTGAAGAACCCTCAGTTCATCTTCGATGTTCAGGCCTCTGACAATGTAGATGCAGTGCTGTCAGTCATTGCTCAGACCTTCATGGACTCCTGCACTATAGCCGACCACAAACTGGGCAGGGATTCCCCAATCAACAAGCTCCTGTACGCTCGAGACATCCCACGATACAAACAAATGGTGGAGAGGTATTATTCAGACATAAGACAGACCATCTCTGTCAGTGACCAGGAGATGAACTCTTCTCTAGCTGAACTCTCTAGGAACTATTCTAACGAAGTTAATCATCTAGTGGCATTGCATGAGTTGTACAAGTATATCAACAAATACTATGATCAGATCATCACAGCTTTAGAGGAGGACTCCACAGCTCAAAAGATGCAGCTGGGATACAGGCTCCAACAGATCGCTGCAGCTGTGGAGAATAAAGTCACTGACCTTTGACCTGTAACCTCGGACAGACACTTGAAAAGACTGTAAAAGAGACAGCCAATGACAGAGAGAGACCAGAGACCTTGCCAAAAGGCATGAACTCTTACTTCCTGAAGCATCCAGAGCACTAAGGAGAACAGAGGATATTTGAGATGGATCGTTATGA

Function

symbol description
plxnb1a Predicted to enable semaphorin receptor activity. Acts upstream of or within axon extension. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNB1 (plexin B1).

GO:

id name namespace
GO:0048675 axon extension biological_process

KEGG:

id description
K06821 PLXNB; plexin B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_03510302_03551418.mRNA True 6256 mRNA 0.53 34 3510248 3551572

Neighbor

gene id symbol gene type direction distance location
CI01000021_03428718_03432817 NA coding upstream 77146 3428576 ~ 3433102 (+)
CI01000021_03382666_03386768 S1, KRT8, E3, KRT4 coding upstream 123348 3380769 ~ 3386900 (+)
CI01000021_03349081_03350266 NA coding upstream 159068 3349081 ~ 3351180 (+)
CI01000021_03164405_03179692 FOXP1A coding upstream 330299 3164405 ~ 3179949 (+)
CI01000021_03119361_03125084 EIF4E3 coding upstream 383467 3119361 ~ 3126781 (+)
CI01000021_03562381_03570309 NA coding downstream 10715 3562287 ~ 3571272 (+)
CI01000021_03594629_03615777 PRKCBP1L coding downstream 43057 3594629 ~ 3616329 (+)
CI01000021_03617827_03624592 MAPRE1B, MAPRE1 coding downstream 66255 3617827 ~ 3624904 (+)
CI01000021_03640760_03747887 LAMA5 coding downstream 89188 3640760 ~ 3747887 (+)
CI01000021_03793387_03846383 NA coding downstream 241815 3793387 ~ 3846383 (+)
G117327 NA non-coding upstream 31849 3451215 ~ 3478399 (+)
G117346 NA non-coding upstream 92633 3411898 ~ 3417615 (+)
G117308 NA non-coding upstream 133276 3376722 ~ 3376972 (+)
G117306 NA non-coding upstream 134937 3375046 ~ 3375311 (+)
G117303 NA non-coding upstream 141723 3368314 ~ 3368525 (+)
G117329 NA non-coding downstream 132664 3684236 ~ 3686269 (+)
G117431 NA non-coding downstream 363114 3914686 ~ 3926601 (+)
G117471 NA non-coding downstream 376267 3927839 ~ 3931690 (+)
G117490 NA non-coding downstream 440084 3991656 ~ 4102768 (+)
G117492 NA non-coding downstream 447451 3999023 ~ 4001123 (+)
G117202 NA other upstream 182015 3269144 ~ 3328233 (+)
G117237 NA other upstream 266884 3237854 ~ 3243364 (+)
G116236 NA other upstream 1213053 2289817 ~ 2297195 (+)
CI01000021_01332646_01333910 NA other upstream 2175839 1331665 ~ 1333951 (+)
G115519 NA other upstream 3026284 480530 ~ 483964 (+)
G117484 NA other downstream 404574 3956146 ~ 3957752 (+)
G117493 NA other downstream 481428 4033000 ~ 4035676 (+)
CI01000021_04886787_04893309 PLAGL2 other downstream 1291161 4886337 ~ 4893474 (+)
G119701 NA other downstream 3248572 6800144 ~ 6860606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location