Gene
RNA
| Item | Value |
|---|---|
| gene id | G117329 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 3684236 ~ 3686269 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU133323 | True | 1944 | lncRNA | 0.34 | 2 | 3684236 | 3686269 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000021_03617827_03624592 | MAPRE1B, MAPRE1 | coding | upstream | 59332 | 3617827 ~ 3624904 (+) |
| CI01000021_03594629_03615777 | PRKCBP1L | coding | upstream | 67907 | 3594629 ~ 3616329 (+) |
| CI01000021_03562381_03570309 | NA | coding | upstream | 112964 | 3562287 ~ 3571272 (+) |
| CI01000021_03510302_03551418 | PLXNB1A | coding | upstream | 132664 | 3510248 ~ 3551572 (+) |
| CI01000021_03428718_03432817 | NA | coding | upstream | 251134 | 3428576 ~ 3433102 (+) |
| CI01000021_03793387_03846383 | NA | coding | downstream | 107118 | 3793387 ~ 3846383 (+) |
| CI01000021_04087145_04091630 | NA | coding | downstream | 399705 | 4085974 ~ 4091826 (+) |
| CI01000021_04219242_04237829 | NA | coding | downstream | 532918 | 4219187 ~ 4238007 (+) |
| CI01000021_04259458_04263656 | NA | coding | downstream | 572888 | 4259157 ~ 4264106 (+) |
| CI01000021_04436103_04476829 | OPRL1 | coding | downstream | 749558 | 4435827 ~ 4477311 (+) |
| G117366 | NA | non-coding | upstream | 146854 | 3536369 ~ 3537382 (+) |
| G117365 | NA | non-coding | upstream | 171235 | 3512712 ~ 3513001 (+) |
| G117327 | NA | non-coding | upstream | 205837 | 3451215 ~ 3478399 (+) |
| G117346 | NA | non-coding | upstream | 266621 | 3411898 ~ 3417615 (+) |
| G117308 | NA | non-coding | upstream | 307264 | 3376722 ~ 3376972 (+) |
| G117431 | NA | non-coding | downstream | 228417 | 3914686 ~ 3926601 (+) |
| G117471 | NA | non-coding | downstream | 241570 | 3927839 ~ 3931690 (+) |
| G117490 | NA | non-coding | downstream | 305387 | 3991656 ~ 4102768 (+) |
| G117492 | NA | non-coding | downstream | 312754 | 3999023 ~ 4001123 (+) |
| G117556 | NA | non-coding | downstream | 458232 | 4144501 ~ 4144835 (+) |
| G117202 | NA | other | upstream | 356003 | 3269144 ~ 3328233 (+) |
| G117237 | NA | other | upstream | 440872 | 3237854 ~ 3243364 (+) |
| G116236 | NA | other | upstream | 1387041 | 2289817 ~ 2297195 (+) |
| CI01000021_01332646_01333910 | NA | other | upstream | 2349827 | 1331665 ~ 1333951 (+) |
| G115519 | NA | other | upstream | 3200272 | 480530 ~ 483964 (+) |
| G117484 | NA | other | downstream | 269877 | 3956146 ~ 3957752 (+) |
| G117493 | NA | other | downstream | 346731 | 4033000 ~ 4035676 (+) |
| CI01000021_04886787_04893309 | PLAGL2 | other | downstream | 1156464 | 4886337 ~ 4893474 (+) |
| G119701 | NA | other | downstream | 3113875 | 6800144 ~ 6860606 (+) |
