G127538


Basic Information

Item Value
gene id G127538
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2125198 ~ 2129093 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU144918
GGGTTTGTAGGAGTCATCATTGCCCACATCAAACAGGTCATCGTCTGACAGTTGACTACCTGAGATGTTAAAAAAGACCATTAGCTTGGGAACAACACCGTAAGTACTCATGCATGGGTCAGTCTTGGGTTTACTAATCCTATTAGCTTTCGATTAGAGACTCAAATCTAAGAACTAAAGGTGAAGCTTTTGTTATCCCAAAAGATGAAAAAGCCCAGCACCATGCAAGAAATAGAAAGCCGAGCTGTCGATTAGGGCTGGGCAAAAAAATAAAATGCTTGATTAAAAATGATCTCGATTTCTATATCGATTCTCAAAATGGATAGATAATTTTCTGTGTTTGTTTAATATACAATCCTATTATTTCCAATCTTCTCCTCTAGATGCCCATCTCTTATTTATCTTGCGGTATGATACAATGCTTTTTGACGCTCTTTTAATGCAGTTCAACAGCAGCAATGAGTGAGCGAACCAGTCAACTTTTCCTCTTTGCTAAAATATATTATGTTCTCATGTAATCGCTCAATCAGTGTTTCAACCGCTCAAACTGTTTCAAGACATCAGTGAAACACCTTGAAAACAATGTCACGGAACAGTCATTTACCTCAGGAAAGTCATTCATGGTCCATAGCTTGTTAGTTATCTAAAAAAATAACTCTGAAGAGGAGCATTTTGCAATTTTATATACACTGTATTACATATTCAGTATATTTTTAGTTTTTACTTAAAGGTGCAATATGCAATATTTTCTGTCCGCTAGAGGTCGCTAGAGGCCTATTCAAAACAAAGGTGTAGCTTGATGATGCCAAGTTTGAGCGCGGAATCTTGGGACATGTGGTCTTCACCTCACAGCCGGTGGAAAAGAATTGGGATAGGACTCGGGAAGAAATCATGTTCATGGATGCGATTATTAACGTTACTGTAGTATGAAGCAGAGCAGGACCGAGTGTTGTGGGAGCTGAACGAGGCCGCTGGAGCGATTGCGCAACACACGCCGCGAGCAGCGGAATTTTTATTATGCCACAGTCGCCGGCGCCGCTTCCGCTTTTCCGGTCATGAGTATGAGGTAACACAGCTCTGTTTATCATATTAGATACATTTGAGTGTGTTGAAAATGTTATAACATTACTCATGTGCGTTCGCTCGGTGGCTGCTGTGAGACACTTGTTACAACTGCAGTAAGCTAGGTCGATTTTAGAATATCGTGTTAAATGCTGGATTGTGTTGATAAATAGCATGCAATTAATTTTAAAACATACTGTATGATGGAGAAAATGCTGTATTACTGTTACTAAAAATAAAGCTGCATCTGATTACTTCACAAAACAGTGTTTTTCTCTGAGGCATGGTAAAGCATGGTACTCGCAAAAAATCAAGAAAATTAGATTTAAACAATAAGACTAAATGTGTTGAGCTATATAACAATAATTTGTTTTCTGTCTATAAATACATCAAAACAGTTGTTCCCTTGCCTATTAAAACATGTAAATATTAAAGCGTCTTTGGTGTTTTCATGGTTTCTACAAAATAAAACGAGGGTAACGCGGGTATGGCGCAATTGACAGGCGACTCCTCACACGTCCCGGAGCCTTAAAATTGTAATTTTCGATTTACAAATAGTTGCAAACATTTGGGATATTGTAAGTACTCAAGTGAACAAAATATATAATACTGGCCTAGTGGTTTTTGGATATTTTACTGCAAAATTCTTACATATTGCACCTTTAACCCATTCATGATGTCACAATTATGTATTGCATGTTTTTTATGACAGGCAATTTTTAAATTATTATATTTCGACAACAAAATTTAAAAGTAGAGATTTCTTTTTTATTAACCCAATAAAACTAAAAATGGCATGGCAAAATAATGGAGCAGGTCACTGAATTATTATTATTTTTTATTATTATTGATTATTATCTGAAAATAAATAGCATGAATGTTATCATTTAGGCTCTGTTGTTAAATGTAACCTTAAATATTATAGTGAAGTACCAATTAACAGTGTTCCCTGTATAGCTCACAGCATTAGCTAAGTTTTTTTTTTTTTTTTCCTTAAAGACCCCTGTGGTGAAAATCAAGTTTTTAATGTTGTTTATATGTCTATGTGGTGTTTTTAATATGCTTTAAGACAAACCATGTGCAAATTTATAAGTCAACACCATTGCTAAGTATTTTCTCCTTAAAACTGCAGTGAACCAAATACAGTCACAAAAATGAGGTTTGAAATCGCCCTTGTTCTCTACGTCACAAATATGTTGTAACCAATCCCATCAACATGCAGGCGGGCTTTAGCATATCATTAATTATGCTGCGATGCAGGGGTGTGTCAAAAGAAGCCAGGTTATTCCGGTATATTTTTCTGTTGGTATGAAAAAGTCATTTTGGTAATCAAAGATGAGTTTTAAGGGATACAATTATTGACTACAGGGGGACTTTAAGAAAAATTGACGTACCTAAAATATTTCTGAATGAATCAAATTGAATATTGAATTGAATCAAGATTGGAATCAAGTGTTATCTAATCGAGAGCTTGTTAAGCAGAATCAATTTGTGAAATATGTATCAATACCCAACCCTACTGCTGCATACAATCCAGAGAAAGCAATGGAACTAGAAATCTGACTGATTCAACTCAAAATCCATGCAAAGTTAAGATGCAAGAGATCAGGAGCCATGGTGGTCACTATGTTAATGCTTCAATCCCTAAAAGCCTTGTGCCGAAATCAGAAAGCCGATTAGATTTTAATAAGAGTGAGATCAGCTTTGATTTGTGGGTACAAAAGTTGATTCTTCCAGCCAAGAAGATAAGGAGAGGAAGAGGGTGGAAGAAGTATGTTACTCTATTTCTTACCACCTCTGCTACCGGGTTTGCCGTCATCACGGCCCCCTCCACTGAGGTCTTTATCTGCCAGGGACAGAAGATGCCATCAAGCCTGGCTAGCTTGGGTTAATCCACGCTGACTAGCAACAGTAGTTTCACAGTGATAGATTGTAAGGACAATATTCTTGTCTTACTTCATTGTGAGATTCCTTTGGCTATGCCTTTGATGACTTTCAAGATTACACAGGCTTTTACAGAAACTGGATGATGCACAACATGTTATGATGTTCAGAAAACAGAGGCCTTAAAGGGATAGTTCATTCAAAAATGAAAATTATCCCATGATTTACTCACCCTCAAGCCATCCTAGGTGTATATGATTATCTGACTATTGTGATATATAAATATATCACAATCGGAGGTTTATAATGGTCGTGAATGGGGGGGGGCGCATTTTGAAGCCAAAAATAATGCATCCATCCATAAAAAAAAAAAGTAATCCATACGACTCCAGTGGGTTAATAAAGGCCTGCTGAAGCAAAGCGATGCTTTTTTGTAAGAAAAAAATATATGCATATTTAAAACTTTATAAATTCAAATAACTAGCTTCCGGCAGATGACCGTACACAGAATGCGCAAGTTGACTTGCACCAAATGAGTAATCCTCTGATGCGATGTATGACGCAGGATGTTGGAGTATCATAAGCTTAGACACCTCTCGTGATTCAAACAAATAGGGCTGTACAACAAATTTAAGCTCCTCTTCTCTTCTCGAAATCCTCTGAAATTTCTCTTTAAAAATTATCATTTTAGACTAATAATCCGTGACCAGTGATTTGTTTTGCTCTATCCTCTGCGTTCGTCATTACGTTGTGCGTCAGGTCAAAGGATACTCTTCCTCCACAAATCGACTTGCGCATTCTGTTATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACGCATCGTTTCGCTTTGCTTTATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144918 True 3812 lncRNA 0.37 2 2125198 2129093

Neighbor

gene id symbol gene type direction distance location
CI01000026_02097643_02120853 MTMR1A coding upstream 3743 2097454 ~ 2121455 (+)
CI01000026_02080994_02090637 MTM1 coding upstream 34561 2080661 ~ 2090637 (+)
CI01000026_02039441_02068942 NA coding upstream 54532 2036945 ~ 2070666 (+)
CI01000026_01961557_01976089 NA coding upstream 149109 1960970 ~ 1976089 (+)
CI01000026_01604062_01608083 NA coding upstream 516031 1604003 ~ 1609167 (+)
CI01000026_02150810_02194735 ARRB2, ARRB2B coding downstream 20947 2150040 ~ 2196065 (+)
CI01000026_02198750_02225249 PELP1 coding downstream 69215 2198308 ~ 2225680 (+)
CI01000026_02230639_02246622 ALOX15, ALOX12 coding downstream 101082 2230175 ~ 2247095 (+)
CI01000026_02249557_02256584 NA coding downstream 118385 2247478 ~ 2256986 (+)
CI01000026_02318608_02319349 NA coding downstream 189515 2318608 ~ 2319874 (+)
G127548 NA non-coding upstream 50959 2073961 ~ 2074239 (+)
G127543 NA non-coding upstream 101109 2014293 ~ 2024089 (+)
G127515 NA non-coding upstream 141926 1983058 ~ 1983272 (+)
G127464 NA non-coding upstream 257025 1866583 ~ 1868173 (+)
G127459 NA non-coding upstream 262465 1862274 ~ 1862733 (+)
G127555 NA non-coding downstream 9806 2138899 ~ 2139109 (+)
G127557 NA non-coding downstream 12517 2141610 ~ 2141825 (+)
G127558 NA non-coding downstream 13309 2142402 ~ 2142616 (+)
G127545 NA non-coding downstream 130165 2259258 ~ 2266147 (+)
G127567 NA non-coding downstream 153038 2282131 ~ 2282358 (+)
G127500 NA other upstream 178759 1931183 ~ 1946439 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 1347401 776757 ~ 777830 (+)
G126556 NA other upstream 1370035 754791 ~ 755163 (+)
G127531 NA other downstream 180229 2309322 ~ 2312135 (+)
G127519 NA other downstream 264590 2393683 ~ 2427006 (+)
CI01000026_02659356_02660297 NA other downstream 530122 2658605 ~ 2660829 (+)
G127979 NA other downstream 1623458 3752551 ~ 3762986 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other downstream 2158780 4327206 ~ 4332085 (+)

Expression


Co-expression Network