CI01000026_02150810_02194735 (ARRB2, ARRB2B)


Basic Information

Item Value
gene id CI01000026_02150810_02194735
gene name ARRB2, ARRB2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2150040 ~ 2196065 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_02150810_02194735.mRNA
CTATATATACCAGCCTCTATATGCTTGTAAACAGGCTGTAATGCAGTTTAAACCAAGAACAGTAATTGGTTTCAAAATAAAATATTAATAAGGCATACAAGATTTACTAAAATAAACAGCACTTTCTGTCATGAAAATACATTTATGTCAAGGATGTTGAATAATTTTAGCCGATGGCCTTTCTGTTTTTAGTAGCCAATTTTTACAGGCTACCACCACGTCACATGAGCGCCCAAGTGTGCTGATATATAACCTAGACTGTGTATGAAGTTAATTCATGTCTGTGCAATAGAGTAGTCCAAACTTTTGCTAGTAATAACAACAATCAATAAAATTAGTACTGTAATCGTATTGTTAAATAATAACAAAAATTCTATTGCTAATTATTATTGCACAGTCACAAAGAATATGGTGGTGGCGCATTATATTTTCCAAAAACGGGCAGTGAACACCAATCAGTCTCATTAATAATCAGTTCACATCCCCCATGAAAGAAGGACGGGTCTGGAATTCCCTTTGTGTATCATCTTAGTTTAATAAGCCCTGCACCCCACTGCTTTTAGAAATGTTGTACCATCTAAAATACAAAAGCACAATGAGTGGGGCTGAGTCATTTTGACAAGTTTTTAATAGCCACACCTGGCAGAAAAGGTTCTTTTTTTCTGTTGTTTTAATATTCTTTATTCTTATTATTTTAGATAAAAAAAATAATAATAATACAGCACAAGAGAAGACTTTAGTGGACTTAAGCCCCTCTCACTCTAACGAAAATGGCAAAAGGGGACCCCAGGAAGCCCAAGGGCAAGATGTCTGCCTATGCCTACTTCGTTCAGACATGCCGAGAGGAGCACAAGAAGAAAAGCCCTGAGATTCCGGTCAGCTTTTCAGAATTCTCCAAAAGATGCTCTGGAAGATGGAAGGCGATGTCCGATAAAGAGAAATCCAGATTCGACGACATGGCCAAACAGGATAAGGTGCGTTATGATCAGGAGATGATGCATTACATGCCTGGAAAGAGAGGCAAAAAGAAGGATCCCAACGCACCCAAGAGACCACCCTCTGGATTTTTCTTATTCTGCTCGGATCATCGTCCACAAATCAAGGCTCAGTATCCCAGCCTGGGTATCGGAGACGTGGCCAAAAAACTGGGCGAACAGTGGAACAGCCTCACAGATTCCAACAAACAACCCTACCTGATAAAGGCCAACAAGCTGAAGGACAAGTATCAAAAGGCATGTCTCCAACTAGATGCTTTAATAGTTTTCCACCATGCAACATATCACAGTTACAGTGTTTTACAATTTAACAATATTTATTTTTTGTGCAGGATGTTGCGGACTACAAGACGAAGGGCAAGGAAAAGGCCTGCGGAGATGGGCGACAAGGCGGGGACCAGAAAAGAAATTGCAACTGAAATCTCGAAGTTATGCGTGGGAGTGCGGCATGTAGTTGCTCTAACAGCTCTTGTTATCTGCCGCTATCTGATGTTATCTTGTTGTTTGAGGACTCAAGTTCGGACTGATATTTTTTGCAGCGCTCGCTGCGGCTTGTCATTGTTATTCGCTTCAATAACAAGCACTTACTACGACAGTCATTCGAAACAGATGGAGCTCTGGGACGCCACTCCTCTCAACGCAGGAGTCTTCAAGAAGTCCAGCCCCAACTGCAAGCTCACAGTATACTTGGGGAAGAGGGACTTTGTGGATCATCTAGATCACGTGGACCCTGTAGATGGGGTGCTCTTGATTGACCCAGAATACCTAAAAGACAGAAAAGTGTTTGTGACCCTGACGTGTGCCTTCCGTTATGGCCGTGAAGATTTGGATGTGCTGGGCCTGTCTTTCCGAAAGGATCTCTTCATCTCCAGTTTCCAGGCCTTTCCCCCTCTGCCTGAGGAGCGCAAACCGCTCAGTCGGCTACAGGAGAGACTGCTCAAGAAGCTAGGCCAGAATGCGTACCCCTTCAACTTCACGGCATGTGGTGTTGACTTTGAAGTCAGGGCATTTTGTGCCAAAACTGTGGATGAGAAGACTCATAAACGGAACTCGGTGCGGTTGGTCATTCGTAAGGTACAGTACGCTCCAGAGAAGCCTGGGCCGCAGCCAATGGTGGAGACCACACGCAGCTTCCTTATGTCTGACCGCTCCCTTCACCTCGAGGCCTCACTAGATAAAGAGCTCTACTACCATGGTGAACCTATCAGTGTCAACGTTCATGTCACGAACAACTCCACCAAAACAGTTAAACGAGTTAAAATCTCTGTGCGACAGTATGCCGATATCTGTTTGTTCAGCACCGCACAGTACAAATGTCCTGTGGCTCAGGTTACAGATGTGGTTCTTTACTCCCACGACACCTACAGCAAGTCTGTGGGCCGACATTCATCATGTGACCAGGTGTCACCCAGCTCCACGTTCTGTAAGGTGTACACACTCACCCCCACACTGAGCAATAACAGAGAGAAGAGGGGTCTGGCTCTGGATGGACAGCTAAAACATGAAGACACCAACTTGGCCTCCAGTACCATAGTAAAGGATGTGTCCAATAAGGAGGTCCTGGGAATCTTGGTGTCCTACAGAGTTAAAGTCAAGCTTGTGGTGTCTCGTGGAGGTGATGTGTCAGTGGAGCTGCCTTTTGTCTTGATGCACCCTAAGCCCTCCGAACAGCCCAACTCTAGACCGCAGTCAGCTGTGCCAGAGACAGATGTCCCTGTGGATGCCAACCTCATAGAATTTGAAACAAATAATTTCTCACAGGATGATGACTTTGTGTTTGAGGACTTTGCAAGGCTCAGGCTGAAGGGAATGAAAGATGAAGAGGATGACCACTTCTGCTAACAGCCCCTCCACACACAGACACACACACACACACACGACACCGTGCGGAGGTTGTAAGGAAGGGCGACAGGGGTGGGGTGTCAACCTGCCAGTACTCTCATACCTCTGCTCCACTGTGCCCATCTGATAGAGTGGAGCACTTACTGATATTTTCTGAGCCTCCTTTCTTTCTATCTTTCTTTCTTTCTTTGTCTTTTGGCTCTTTTTCACACCATTTTAGCATCTGTGAGGTGGTCTTTTAATTGGCCTCTGTTTCTCTGGTCATATCAACCACTTCACTAGGGTCCTTATTTGTTAGAAAGATTGAGGGAGAAGGAAAGGGAGGAAACTGATGTTAGATGGGTTATCTAAACATCAATGTATTATTGGTGGGCAAAGGGTCCATTGATTCAGGGGTGATTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTATCTTTTCCTTTATTTTTGTCATCATATTCCCACTTATATATCAAGTGGGCATTAATAGCTATGTAATTATGGTATATGTTCTATGTTATTTCATTGTACAGTACATACACTGTTCACAAACACCATAGGGAACTTGAGTTTGGTGTTAATTTTATTCCACTTTCCCAGACCCATAATCCAATCCATCCAGCAGCTTTTATGTTATAGTTATGTAAAATGTATACATATCATACAAGACTACGTAGTAACACTTTTCTGTGCACTTATAGTGCACGCAATACTCGAATAATTAAGGACGTGGCATTTTTAGTGAAACAGAGTAGTTGGCGAAGTGCATTGGGACACAAGTGTCTGGTTTCTTATTGTAAATTTTAGCATCTATTCCACATGTTGAGTTGTAGAATATGTAAACACTGCTACAAGTCTTCAGTGCGAAATTAGCTTGTAGATACAACGAGAGGACAGGGATACAGGCTCTGTATGTGCCACACACACACACAAACACACACACACACACAATGTAATTCCTCATTATTTGTGCCTGCCAAACTTTATTTGCCAAAATGTGATTTATAATGTTGCTTGTAAGTTAAGCTCGGTTCGGTTGAAAATCACATGCTCATTCTTTGTTTTAGCTGACAGGAACTGTTGATGTAACCATTTGACTGCCAGAAATATTTTGATGATGGTTATTTTAAAATCGCATTTATAGCATGATTTCCAGGAAATTTGACTTTTTATCTTGTTCTCCCAGGATCAGCCCTTTCCTATGACATTCTACATAGTTTACTACTGAACAATGGCAAACTTACTTATGTTACAATGTGTACAAGGAAGTAACATTTTGCAATGAACAAAGTGGAGCTCCCGTTGAAGGACAAAAAGCTATCTCTAAA

Function

symbol description
arrb2b Predicted to enable angiotensin receptor binding activity. Acts upstream of or within muscle organ development; regulation of receptor recycling; and regulation of signal transduction. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; axis; brain; vasculature; and ventral mesoderm. Orthologous to human ARRB2 (arrestin beta 2).
arrb2 Enables angiotensin receptor binding activity and ubiquitin protein ligase binding activity. Involved in several processes, including cellular protein metabolic process; desensitization of G protein-coupled receptor signaling pathway; and negative regulation of NF-kappaB transcription factor activity. Located in several cellular components, including cytosol; endocytic vesicle; and nucleoplasm. Biomarker of portal hypertension.

GO:

id name namespace
GO:0008589 regulation of smoothened signaling pathway biological_process

KEGG:

id description
K04439 ARRB; beta-arrestin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_02150810_02194735.mRNA True 4167 mRNA 0.43 20 2150040 2196065

Neighbor

gene id symbol gene type direction distance location
CI01000026_02097643_02120853 MTMR1A coding upstream 28585 2097454 ~ 2121455 (+)
CI01000026_02080994_02090637 MTM1 coding upstream 59403 2080661 ~ 2090637 (+)
CI01000026_02039441_02068942 NA coding upstream 79374 2036945 ~ 2070666 (+)
CI01000026_01961557_01976089 NA coding upstream 173951 1960970 ~ 1976089 (+)
CI01000026_01604062_01608083 NA coding upstream 540873 1604003 ~ 1609167 (+)
CI01000026_02198750_02225249 PELP1 coding downstream 2243 2198308 ~ 2225680 (+)
CI01000026_02230639_02246622 ALOX15, ALOX12 coding downstream 34110 2230175 ~ 2247095 (+)
CI01000026_02249557_02256584 NA coding downstream 51413 2247478 ~ 2256986 (+)
CI01000026_02318608_02319349 NA coding downstream 122543 2318608 ~ 2319874 (+)
CI01000026_02332785_02336722 NAT16 coding downstream 136138 2332203 ~ 2336946 (+)
G127558 NA non-coding upstream 7424 2142402 ~ 2142616 (+)
G127557 NA non-coding upstream 8215 2141610 ~ 2141825 (+)
G127555 NA non-coding upstream 10931 2138899 ~ 2139109 (+)
G127538 NA non-coding upstream 20947 2125198 ~ 2129093 (+)
G127548 NA non-coding upstream 75801 2073961 ~ 2074239 (+)
G127545 NA non-coding downstream 63193 2259258 ~ 2266147 (+)
G127567 NA non-coding downstream 86066 2282131 ~ 2282358 (+)
G127574 NA non-coding downstream 103208 2299273 ~ 2299835 (+)
G127591 NA non-coding downstream 185552 2381617 ~ 2381953 (+)
G127593 NA non-coding downstream 187026 2383091 ~ 2383341 (+)
G127500 NA other upstream 203601 1931183 ~ 1946439 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 1372243 776757 ~ 777830 (+)
G126556 NA other upstream 1394877 754791 ~ 755163 (+)
G127531 NA other downstream 113257 2309322 ~ 2312135 (+)
G127519 NA other downstream 197618 2393683 ~ 2427006 (+)
CI01000026_02659356_02660297 NA other downstream 463150 2658605 ~ 2660829 (+)
G127979 NA other downstream 1556486 3752551 ~ 3762986 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other downstream 2091808 4327206 ~ 4332085 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location