CI01000026_01961557_01976089


Basic Information

Item Value
gene id CI01000026_01961557_01976089
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1960970 ~ 1976089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_01961557_01976089.mRNA
AGATAAAAAAAAACTCAGTGAAAACTAACAAGGTGCAGTTTCAGTGATTCAAAACTATGAATACTTGACATATGGTTTTTGTAATGATTGCTCACCTTGTGGAGCTGGGGCTACTGAATACTTAATATAAACCTTAGCTCTAATGTTTTTCTTAACCTAACCAGAACCACAGTGTCAAAATTCTCACTGCTCTGATCAACTGCATTGAAAGATGTCAATCTGAGCTTTTGGAAATGATGGAACAGAAGCAGAAAGCAGCAGAGAAACAGGCCGAAGAGCTCATTGAAGAGCTGGAGCAGGAAATCACTGAGCTGAAGAGGAGAGACATTGAGCTGGTGCAGCTCTTACACACTGAGGATCACCTGCACCTTCTACAGGTCACCATTCTTTACTCGGTAATATCTCTTAGAATTCTTTAATCAGAGCAAACCTCATGCTCAGGGATCTCCTCTCTCTTGCATTACTCCAGACTTGCTCATCTGCATGCAGCCCTCCACAAGTCAAGTCCTGGACCAACAACAACACTGATATGAACATAGATCTGAACTTTGGAGAAAGCTCTCCAGAGGCTTCAGGAAAACGTCAAAATGGAGCTGAAGAAATTCTTTGAAATCATCCATTGTCCACACAGACCTTCAGTTGTTCAAGAACTAAACGTCTCTATACCAACATCAGAGTTTTCTGCATCAGTTCTTAGGAGTACTGATAGAGATTCTGTTCCCTCTCATCCATTACTGAAGTCTGAAAGTTCTTCAGTGATGGAGAAAAAAGATGACAAGCCCCAGAAGGTGGGGCTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTCTACAATGTGGAGACCAAGGCTCTTATCTACTCCTTCAATTGTCTGTCTTTTACTGAGAGAATCTATCCATTTTTCAGCCCTTGCAACAAAAGAAGAGATATTCACCTTGATACTCACAAAACTGCACCAAGGCTCATAAGGCACAAACTGATCAACCCCGTGGAGAACCTGGAAGATTATATCTGCGGGAAACATGATAAACCACTGGAGATGTTCTGCAGAGATGACCAGACCTGTCTATGTCTGTTTTGCACTGAAACAGTACATAAGACTCATAATGCTGTTCCTATAGAGGAAGAAAGTGAACACAGGAAGGTTCAACTGGAAAAGACACAGGCAGAAATCAAGGTGATGATCCAGGACAGAAATAAGAAGATTAAGGAGACAAAAAACTTAGTGAAGTCCAAAAAGGTTTACTCATCTATGTGCAGCCCTCCACAAGTCAAGACCCGGACGAACATCAACATTAACATAGATCTACTGAACACAGAAACTCTAGAGAAAGCCCTTACTTGCCTCAAGAAAAAAGTCAACAAGGAACTGAAAAAAATCCATGAGATCAGATTCAACTTCATTCTACCAACATCACAACCTTCAGCCAATAGGATATTTGTATTTGGCAGCACTAACACAGATTCCGTTCCCTCAAGTCCTTTATGGGTACCTAAAAGTTCTTTAGTGACTGAAAAAAAGAATGAGACTGTGAATTTGAGAACACAGCACAGCACCCTGACAGAGATTTCAAAAATCAAAACAAGCAAAGTTCAGACAGAGGGCAAAATCTACTTTACTCTGGGTAAAACAGACTGCAGCACTCCCTCAACGAAGAGAGTGGGAATGATTAATGAACAAGTGAAGGTCTCACGCTTCGGTGTGGGTACTTCTCCATTAGCAGATCTGAGCTCAATACAGAAACTTTACGAAGGTATGGCTAGAGAGTCCATTAGGAGAAAGGGGAAAATAAGAGTGTGCCCAGAGAATGGGTTTTGGTGTATATGGCTAAGGAATGGCTGTGAATATATGGCTAATGAATCCTGTCCTGTTTCCCTTTCCCTGAAAGACAAGCCCCAGAAGGTGGGGCTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTCTACAATGTGGAGACCAAGGCTCTTATCTACTCTTTCACTGGTCTGTCTTTTACTGAGAGAATCTATCCATTTTTCAGCCCTTGCAACACAAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_01961557_01976089.mRNA True 2040 mRNA 0.42 8 1960970 1976089

Neighbor

gene id symbol gene type direction distance location
CI01000026_01604062_01608083 NA coding upstream 351803 1604003 ~ 1609167 (+)
CI01000026_01587300_01603806 CYP26B1 coding upstream 357164 1587300 ~ 1603806 (+)
CI01000026_01516754_01566669 EXOC6B coding upstream 392634 1516359 ~ 1568336 (+)
CI01000026_01479116_01511199 EXOC6B coding upstream 449652 1479116 ~ 1511318 (+)
CI01000026_01449646_01450471 NA coding upstream 510499 1448858 ~ 1450471 (+)
CI01000026_02039441_02068942 NA coding downstream 60856 2036945 ~ 2070666 (+)
CI01000026_02080994_02090637 MTM1 coding downstream 104572 2080661 ~ 2090637 (+)
CI01000026_02097643_02120853 MTMR1A coding downstream 121365 2097454 ~ 2121455 (+)
CI01000026_02150810_02194735 ARRB2, ARRB2B coding downstream 173951 2150040 ~ 2196065 (+)
CI01000026_02198750_02225249 PELP1 coding downstream 222219 2198308 ~ 2225680 (+)
G127464 NA non-coding upstream 92797 1866583 ~ 1868173 (+)
G127459 NA non-coding upstream 98237 1862274 ~ 1862733 (+)
G127469 NA non-coding upstream 112965 1847743 ~ 1848005 (+)
G127467 NA non-coding upstream 115794 1844850 ~ 1845176 (+)
G127450 NA non-coding upstream 153660 1806880 ~ 1807310 (+)
G127515 NA non-coding downstream 6969 1983058 ~ 1983272 (+)
G127543 NA non-coding downstream 38204 2014293 ~ 2024089 (+)
G127548 NA non-coding downstream 97872 2073961 ~ 2074239 (+)
G127538 NA non-coding downstream 149109 2125198 ~ 2129093 (+)
G127555 NA non-coding downstream 162810 2138899 ~ 2139109 (+)
G127500 NA other upstream 14531 1931183 ~ 1946439 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 1183173 776757 ~ 777830 (+)
G126556 NA other upstream 1205807 754791 ~ 755163 (+)
G127531 NA other downstream 333233 2309322 ~ 2312135 (+)
G127519 NA other downstream 417594 2393683 ~ 2427006 (+)
CI01000026_02659356_02660297 NA other downstream 683126 2658605 ~ 2660829 (+)
G127979 NA other downstream 1776462 3752551 ~ 3762986 (+)
CI01000026_04327206_04331151 DOK4, DOK5 other downstream 2311784 4327206 ~ 4332085 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G317029 LOC108415930,LOC108415183,LOC108413326,LOC108415182 non-coding NW_019172876.1 APWO02000073.1 531995 ~ 543677 (+)