CI01000026_01587300_01603806 (CYP26B1)


Basic Information

Item Value
gene id CI01000026_01587300_01603806
gene name CYP26B1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1587300 ~ 1603806 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_01587300_01603806.mRNA
ATGCTCTTCGAGAGTTTTGACCTGGTCTCGGCGCTGGCGACGCTGGCTGCGTGTTTAGTGTCCATGGCACTTCTTCTGGCCGTGTCCCAGCAGCTCTGGCAGCTGAGATGGACCGCAACACGGGACAAGAGCTGCAAGCTGCCCATGCCCAAGGGCTCCATGGGGTTCCCCATCATTGGAGAAACATGCCACTGGTTCTTTCAGGGTGCAGGTTTCCATGCATCAAGGAGGCAGAAGTATGGGAACGTATTCAAGACCCACCTACTCGGGCGGCCGCTGATCCGGGTGACGGGGGCAGAGAATGTGCGTAAGGTTCTGATGGGAGAGCACAGCCTGGTCACTGTGGACTGGCCCCAAAGCACCAGCACTCTATTGGGTCCCAACAGTCTGGCCAACTCTATAGGAGACATCCACCGCAAAAGGAGAAAGATCTTTGCTAAAGTCTTCAGTCATGAGGCTCTGGAGAGCTACTTGCCCAAGATCCAGCAGGTCATTCAGGAAAACCTGCGGGTGTGGAGCTCCAATCCTGAGCCCATCAACGTGTACCGTGAGTCCCAGCGGCTCTCCTTCCACATGGCCATACGTGTGCTCCTGGGTTTCCGCGTTTCTGAAGAGGAGATGCGCTGTCTTTTCCAAACATTCCAGGATTTTGTGGAGAACGTTTTTAGCCTTCCCATCGACCTGCCGTTTAGTGGTTATAGGAAGGGTATTCGTGCAAGAGACTCACTCCAGAAAAGCATAGAAAAAGCCATCAGAGAGAAACCACTCCACACACAGGGGAAAGATTACACCGATGCTCTTGATGTGCTTCTAGAAAGCGCCAAGGAGAACAACACAGAGCTTACAATGCAGGAGCTGAAGGAGTCCACAATTGAGCTGATCTTCGCTGCTTTTGCCACAACAGCCAGCGCCAGCACATCTCTGATCATGCAACTGTTGAAACACCCTCCTGTGCTGGAGAAGCTGCGGGAGGAGCTGCGGAGTTGCGGCCTGCTGCACGACGGCTGTCTGTGCCAGGGTGAACTGCGTTTGGACAGCATCATTAGCCTCAAGTACCTGGACTGCGTGATCAAAGAGGTCCTGCGTCTCTTTGCCCCCGTGTCCGGAGGTTACCGCATTGCCACGCAGACCTTTGAGCTGGATGGTGTACAGGTACCTAAAGGTTGGAGTGTCATGTACAGCATCCGCGACACCCACGACACCTCAGCTGTATTCAAGGACGTGGAGGCCTTTGACCCAGACCGGTTCAGCCCAGAGCGTAGTGAGGATCGTGAGGGCCGCTTCCACTACCTGCCCTTTGGTGGTGGCGTTCGCTCCTGCCTCGGCAAGCAGCTGGCCACTCTTTTCCTCAAACTCCTGGCCGTGGAGCTCGCTGGAGGTAGTCGCTTTGAGCTGGCCACGCGGACATTCCCGCGCTTGATTTCGGTCCCTGTGGTACACCCTACTGATGGCCTTCGTGTAAAATTCTTCGGCCTCGACTCCAACCAGAACCAGATCATGGCCAAGCCGAACGACATGTTGGATGCCACCGTG

Function

symbol description
cyp26b1 Predicted to enable retinoic acid 4-hydroxylase activity. Acts upstream of or within several processes, including animal organ morphogenesis; negative regulation of retinoic acid receptor signaling pathway; and retinoic acid catabolic process. Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including brain; cranium; hindbrain neural keel; pectoral fin; and pleuroperitoneal region. Used to study craniosynostosis and osteochondrodysplasia. Orthologous to human CYP26B1 (cytochrome P450 family 26 subfamily B member 1).

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K12664 CYP26B; cytochrome P450 family 26 subfamily B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_01587300_01603806.mRNA True 1533 mRNA 0.55 6 1587300 1603806

Neighbor

gene id symbol gene type direction distance location
CI01000026_01516754_01566669 EXOC6B coding upstream 18964 1516359 ~ 1568336 (+)
CI01000026_01479116_01511199 EXOC6B coding upstream 75982 1479116 ~ 1511318 (+)
CI01000026_01449646_01450471 NA coding upstream 136829 1448858 ~ 1450471 (+)
CI01000026_01431872_01432826 GPHB5 coding upstream 154383 1430400 ~ 1432917 (+)
CI01000026_01400733_01422031 PPP2R5B coding upstream 165017 1400733 ~ 1422283 (+)
CI01000026_01604062_01608083 NA coding downstream 197 1604003 ~ 1609167 (+)
CI01000026_01961557_01976089 NA coding downstream 357164 1960970 ~ 1976089 (+)
CI01000026_02039441_02068942 NA coding downstream 433139 2036945 ~ 2070666 (+)
CI01000026_02080994_02090637 MTM1 coding downstream 476855 2080661 ~ 2090637 (+)
CI01000026_02097643_02120853 MTMR1A coding downstream 493648 2097454 ~ 2121455 (+)
G126752 NA non-coding upstream 148151 1438914 ~ 1439149 (+)
G126746 NA non-coding upstream 197267 1389823 ~ 1390033 (+)
G126603 NA non-coding upstream 202777 1330982 ~ 1384523 (+)
CI01000026_01378924_01381978 NA non-coding upstream 204795 1378344 ~ 1382540 (+)
CI01000026_01300881_01338917 MARK2B, MARK2 non-coding upstream 260110 1300881 ~ 1339688 (+)
G127402 NA non-coding downstream 108573 1712379 ~ 1712666 (+)
G127405 NA non-coding downstream 111856 1715662 ~ 1716279 (+)
G127417 NA non-coding downstream 132061 1735867 ~ 1736127 (+)
G127436 NA non-coding downstream 156659 1760465 ~ 1760771 (+)
G127444 NA non-coding downstream 171274 1775080 ~ 1775357 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 809503 776757 ~ 777830 (+)
G126556 NA other upstream 832137 754791 ~ 755163 (+)
G127500 NA other downstream 327377 1931183 ~ 1946439 (+)
G127531 NA other downstream 705516 2309322 ~ 2312135 (+)
G127519 NA other downstream 789877 2393683 ~ 2427006 (+)
CI01000026_02659356_02660297 NA other downstream 1055409 2658605 ~ 2660829 (+)
G127979 NA other downstream 2148745 3752551 ~ 3762986 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location