CI01000026_01516754_01566669 (EXOC6B)


Basic Information

Item Value
gene id CI01000026_01516754_01566669
gene name EXOC6B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1516359 ~ 1568336 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_01516754_01566669.mRNA
ATATATAATACCGTAAAGTATGTATGTTGGCAGAGAAAGCTGTCTCACTTTTATTGGGACCCCTACCAAGACTTTGGCTACTCATTGCCTCTTCACATCCACCAGTCATGTCCTATGTGGTTTTCAGAACGTGGCCGGGTCCCCACGCTCAAATGTCAGTTAAAATTCAACAATAAACATTTGACTTCTTTTGGCCGGCTAACAGGAGTCTGTGCCTCGGCGTGTGGGGTCCAAGGGCTCCAGATCAAGCCAAAATCCCCCATACACACAGCTAATTTAAGAATACTGTCAAATTATGGCTCAACTCGCTGGATCTTTTCGTATTTGACATATTTGTAAAAATGGATCCCTATTAGCACAAGTTGCGATGGAGTAAGAGGGCAAGAGGCGGCCAGATGGTGTTCAGCCAGAGGTCTCAGATGATGGGGTCAGGATGCTGGATCATTGTTTATCAGACCAAACCCCCACCCCAATTTTCACTGAATAACTCCACAGAAATTGATGACATGATCCGTAAGTCTACAAATCTCCTGCTCACACGAACCCTTAGCCACTGCCTACAGTATGCCATAAAGAAGAAAAACGTTGGACTGGCAGAGTTGGTTCAGATCATCATCAACACCACTCACCTGGAGCAGTCCTGTCACTACCTAGAAGAGTTCATCTCCAACATAACCAACGTGCCTCCTGACACCATTAATGCAACCAAACTCTACGGAACCTCTACCTTCAAGGATGCAAGGCATGCTGCTGAAGAGGAGATCTACACTAACCTGAATCAGAAGATTGACCAGTTTCTGCAGCTGGCTGATTATGATTGGACGGCTACACAGGGAGGTGGACAGGCCAGTGACTACCTGAGTGACCTCATCGCTTTCCTCTGTAGCACCTTTGCAGTGTTCACTCACCTGCCTCTTTCAGTAACAGAGAAGTGTGGCCCTTTCAGCTCACCGCAAAACAGCCCTCACATTGTTGGCTGGATTTCACCAACAGGGGGCAATGTTTGTACGACCCCAGATATGTCGCTTATAATATTGTGTTTGCACATTCCAGCTCTGCATGTGAACATAGTGCATCCTGATTCACTCAGCCCCATCTGTGCAACCTCACCATGTCCTCAGTTCTCACTCCTGATGGTTTTCAGGAAAGGGCAATGCTATAGAGCACGCCATGCTACCGGTTCCTGGTATTTGTTTGTAGAGTTTTACCATAAAATTCAAATGGGGAAGGTGGCTCAGACGGCATGTATGTCAGCCTGTAAACACCTTTCCACCTCCCTGCTGCAGCTGCTGTTGGAGGCTGATGTCAGGCAAGTGTCTATGGGAGCCCTGCAGCAGTTTAACGTGGACGTCAAAGAGTGTGAGAGTCTCTCTCCTGTAAAAAGGCGAGTGGGGAAGTTCGAAAAATCGACAGTCTCTCGGACTGAGACGCGGCAACAAAAGCACGAGGCCCATTGGCTTTTCACAAGTGTTGTCGGCCCCTTCGCTAAGTACCACACCACTGGTCTGGGAGAGCGGCCTCATGGGAATCGGCGTCAGGCTTCAGGGTTTGCCAGGGCCGGCCCGGTGCCTGGCTTCCAGGGGGACACTCTGCTGCTCGCCTTCATCGACTTGAGACAATTAATAAAAATTCCATTAAGTTTTTTGTCATCCACTGACATTTCAATGACCATGGACCTGATCTGTAAGGTTATTTTCCACCTTTGGAGGGGAGAGATAGAAAGTTTGAAAGAACAAAGACTGCCACAGAATCTCGATTGTACAAGCAAACCAGCTCTCCTAGATTTGCCTGTCTTTGCTTATGGAAAATATGTGAAAATGAATGAGAAGGAGTGGAAATGTAGGAAGGAGAAAGAAAAGGAAACGACACAGGCAGTGCTCTCCTCAGACCATTTCTCCATAGTCTCCCTAAACAAGCCAGTGACAGTTAGGGAGTCAGGCAGGATCCAAAGTCTGAACCCCTTACCATATACCACTTTAGATCAGCCCCCGCGCCAGGGAGCTATGCCCTCACGGGAGAGCCTGGGTAACGGGGCAATAACTAACCTTGTCGGAATAGACAGGAAGGTCTCTATGACCGCTTCACCACACCATAACCCCCGAGATAACTCTTCCTTGTCTGAAGAGGACAGGAAGAGTTCAGTGCAGTGTGAATTCTGTTTGAATGAGAGCATCACTATCTCCTACTCACTCTGGAGTACTCTGAAGTATACAGGTCATTACAGCCTCTTTCTGAGAGAGGCCGATAACACTGTCGGGGGTCACGCCGAGGTCAAAGAGAGACCGAGTAGAAGTTCATTGGGAGGTGAAGGCGGGGCGGAGAGGCAGAGCGGAAAGCCTTCCTCCCTTGGTGGGTCTGTACAGACCATGCTAGCGGGAAGAAGAGAAAGGAAAAAACAAGATATGAATGCAAATCCAAAAATCACTTATCTCACGCAGTTACTGGATCTCTTCACTCAGTGGGACTGGTCTACATATCTGGCTGACTACGGCCGACCCACCTGCAAGTACCTGCGAGTCAATCCTCACACGGCGCTGGCCCTTCTAGAGAAGATGAAGGACACCAGCCGCAAGAACAACATGTTCGCTCAGTTCCGTAAAAACGAACGGGACAAGCAGAAGCTCATAGACACCGTTGTCAAACAGCTGAAAAATCTCATCGCCACCAACCAAGCCTGAGAAAGCCAACGCATCAGAAGACGGCCCGCGTCCTGATGACTTGCCACCATCAGAGCCTGCGCTTGCTCACCTCCATTAGTTGGACACACCGTTCTTTTAACACACAGGACTGGCACACACACATATTAATGCACCTCTCTGAAAGGTGCACCTGCTAAACCATCCCGTGAATGTGTGATAGGTGTCCATGTCTTCCTGTGTACTACCTGAACACATTAAGGGCACCAAATCACATTTTGTTCTTTGAAACTGGATTTGGTTGTTTTATTCTCTGGTATTGTTCTTTTGTCACACTAACTTCCTGTCGCACAATTTGAATTGCCTTTACAATAGTTCTAAAGTATTATTTATCTTGTTTTTGAATTTGACAACTACAGCTACACTGTAATGTGAATATTACTTAAATTGCTGCAAAGTTAAAGGAAATTGGAACACTAACTAGGCTTGCTGTCATAATTTGTCAAGGGATAGTTCACCCAAAAATGAAAGTTGTCATTTTTTACTCACTCATTTTGTTACAAACCTCTATGACTTGCTTTCTTTTGTGGAAAACGAAAGAAGATACTTGAGAAAGGTTTTGTTGCCAACTTCTTCTTCAAAATAATTTATTTTGTGTTCTCCAGAAGAATAAGTCATACAGGTTTGGAACAACATGATGGTGAATAATTGATGACAGAATTTTCATTTTGGGTGAACTATCCCTTTATATAAATTAATATTCTCACAGATGGGTCAAGGGTTCATTTAAATGTGGAGTTCTCAATACAGGGAATCCAGTTACTGCCCTTGTTTAATATTTAATGCATAGTAATTATATACTAGACATACTCCAGCTTTAGTCTGTTACAGCCAAGATGTAGATTATAGCTTAATACCTTAAAGAACGACAGTTGTGTGACAGCTTTGGCAATGATTAGTTTACTATTGTCACAAAAACAACCAGGTTAAGATGTTTTTGATTGGACTTCCAGTATGCAGAATAGTCTCTTGTATTCATTGATTGCATATATAGCATTCAATGCGAGAACTGACTGAAGATGTGTAAGGTAGGGGAACCTACTATAATGTCATTGAGATAATGACATTATACAAGAGCACATTTCTACAGTCGTCCAAGTTTATGTACACTGCTGTACATTTAATATAAATGGCTTTTAGTATTTAAACAGTGTCATCTTGCCATAACTTTGATACTTTCCCTGATAGGAATGAGGGTGCAATATTATATTTTCTTTTCAAATTGAACTGAGGGATTGTTTTGTTTGTTTTTGTTTAAAGGGAGTTTTCTTTTTCTTTCATTTTTATTTTTACTGGCACAAAAGATGCACGTTTGGAGCCTGTCCCTTACAATAGAAGCAAAATCATTAAACTATAAAGGGAATTCTTCAGTTTTAGCGACAGAACCAGCGTGGTTTTCTGGATTCAGCTCTTCTTGTCTGTGCCTTGACGTTTTTTTTTTTTCCATGCCAATATTTGATTCATGTGTTTTCCACACAGCACCTGGCCTTGGACGTGTGACCAGGGATTGGATCTGCGTTGGTGTGTGAGAGTTAGCGTGCATGAGAACATTCAGCCTTAACAGACAGCTCTGATTGTAGAGAACAGTCGAGAGAGAGATGCACTGTACAGATTGTTATATTAAACCACTAATGAATGTTACAATACTA

Function

symbol description
exoc6b Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to act upstream of or within vesicle docking involved in exocytosis. Predicted to be integral component of membrane. Predicted to be part of exocyst. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia with joint laxity type 3. Orthologous to human EXOC6B (exocyst complex component 6B).

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K19985 EXOC6, SEC15; exocyst complex component 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_01516754_01566669.mRNA True 4345 mRNA 0.44 23 1516359 1568336

Neighbor

gene id symbol gene type direction distance location
CI01000026_01479116_01511199 EXOC6B coding upstream 5041 1479116 ~ 1511318 (+)
CI01000026_01449646_01450471 NA coding upstream 65888 1448858 ~ 1450471 (+)
CI01000026_01431872_01432826 GPHB5 coding upstream 83442 1430400 ~ 1432917 (+)
CI01000026_01400733_01422031 PPP2R5B coding upstream 94076 1400733 ~ 1422283 (+)
CI01000026_01394994_01396250 NA coding upstream 118497 1394994 ~ 1397862 (+)
CI01000026_01587300_01603806 CYP26B1 coding downstream 18964 1587300 ~ 1603806 (+)
CI01000026_01604062_01608083 NA coding downstream 35667 1604003 ~ 1609167 (+)
CI01000026_01961557_01976089 NA coding downstream 392634 1960970 ~ 1976089 (+)
CI01000026_02039441_02068942 NA coding downstream 468609 2036945 ~ 2070666 (+)
CI01000026_02080994_02090637 MTM1 coding downstream 512325 2080661 ~ 2090637 (+)
G126752 NA non-coding upstream 77210 1438914 ~ 1439149 (+)
G126746 NA non-coding upstream 126326 1389823 ~ 1390033 (+)
G126603 NA non-coding upstream 131836 1330982 ~ 1384523 (+)
CI01000026_01378924_01381978 NA non-coding upstream 133854 1378344 ~ 1382540 (+)
CI01000026_01300881_01338917 MARK2B, MARK2 non-coding upstream 189169 1300881 ~ 1339688 (+)
G127402 NA non-coding downstream 144043 1712379 ~ 1712666 (+)
G127405 NA non-coding downstream 147326 1715662 ~ 1716279 (+)
G127417 NA non-coding downstream 167531 1735867 ~ 1736127 (+)
G127436 NA non-coding downstream 192129 1760465 ~ 1760771 (+)
G127444 NA non-coding downstream 206744 1775080 ~ 1775357 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 738562 776757 ~ 777830 (+)
G126556 NA other upstream 761196 754791 ~ 755163 (+)
G127500 NA other downstream 362847 1931183 ~ 1946439 (+)
G127531 NA other downstream 740986 2309322 ~ 2312135 (+)
G127519 NA other downstream 825347 2393683 ~ 2427006 (+)
CI01000026_02659356_02660297 NA other downstream 1090879 2658605 ~ 2660829 (+)
G127979 NA other downstream 2184215 3752551 ~ 3762986 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015790 exoc6b,LOC105895564,LOC106560516 coding CM030132.1 CM030132.1 22507006 ~ 22513164 (-)