CI01000026_01431872_01432826 (GPHB5)


Basic Information

Item Value
gene id CI01000026_01431872_01432826
gene name GPHB5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1430400 ~ 1432917 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_01431872_01432826.mRNA
GTATAAAAGTGGGATGTAAACATGAAAACTCAGCATCAAGAACACTTTTGTCATTATTTTCACTCAAAACCTTTTGACACATCTGGGGTTTTTGTTCACTCTCTAGTAGCCTACAGTTTCTTCCGAAAGATGTTAATTTAAAGCCGACCCTTTCCTTTAGTTTTAGTCAGGCCGTTAACATTAGTTCACACCATTGACTTGAAGCTGATGTCATTCAGCTCATTCCTAAAACACGAGCAGATGTTTAAAACATGTTTGGTTAAGTTTACTTGTAGTGTGTTGTAATGTTCCAGGCTAGATTAATGGGAATTGTAATTAGAGTGATGTCAGATTGTCCTATAAACGTGCTTTAAAACAGCAAGAAGGCAGTCGGTGGAGGAACATGGTTCGGTAATTTTCTTCCCAAAAGCTTCTGGCATCTGCTTGTGGACTCAAACAGGTGAGTTTCTTGTTTTATTGCTATTTTGTGTATTTCTATAAGGACTGAGTTCTCGCGTCAGTGTCATTGCTTTAATCCCAAGGAGTTTAGGTTGTCAACTATACATGGAAGTGCAGGTTGTCTAGATTTCCTGTAAACATTTTTACATGGCAGGTGTCAATACTCAGTCACATGACCAGAGCTGTTCCAGTTTTCCTCTCTGATGGATGATGCCCTTCAGAAAGAACGACCATATTTTGAAATTTACGCTAAATTTTAAAAGTTCTATAATGAATATTAAGACTTGCTCTCTTACATTATAAAACTGTATATTTCCAATTATTGTTAAATAAAATAAATTAAAAAAGATTTATTCATGGATTATTTCCCCCATAATTGCCTGATAGTTTCGTTTCATAAATTAGCCTAATTAGTAAAAGGTTTTTTTTTTTTTTTTTTTTCATAAATTATATTAATTTACATTATAGTTTGCTTTCTATCGGGACTTACTGACAAACTTAACAACACCTCGTCCTACTTGCACTTAAATAATAATTCTGAAAATTCTGTTTCAGTCACTTAGCAGGTAAGTTAGGCTAAAATTTGGCAGCGAAATGTAGCCTACGCTTTAAAATAAAGCACGTTGGTCCACTTAATTTATATAATTCGAGATCATAAAGGATTACTTTCAAATAATTAGAAACTTAAATTTACTGAAATTCAAATTGAAGAGAAAGTAGAAGTAGCACCGTAGCATCTCACATGTCATGTTGCTAAATAGCTTATCGTTACATAAATTTGCTTGTTCATTAGTGTAGATTTATGCCATTTGAGTTAGTAAAGCACTTTGGAACGTACTTTTCTGCTCTAGAAAAGATGACAAATACAACGTCTTGTTTATGGCTTATATTTATACAAGAAATGGTGTGTCGAAATGGGAATTTCTAAAGCTTTTAACTAGTAATGTCTTACCCACTGACTGAAAAAAAAGGTCTTACCATACAAACCCCCGCAATACCGCACGCTGGCGACGTCTGCTGGTCACATGTATGCAATGGCAATCAGAAGCCCCACCACAAGAACTGCCACAAATAATTTAAGAATGTGCCTCGACCGCTTCTCGGTGACCGCTGTGACCTTTCTGCTCCTGTTTCCTGGCTTTTATTCCACCATGACTGTGAAGACCTTGCAGAGTTTTCGTGGATGCGCTGTACGTGATTTTACTTTTGTGGCAAAGAAGCCTGGATGCAGGAGTCTGCGGATAAGCACTGAGGCATGCTGGGGCCGCTGCCACACCTGGGAGAGGCCAGTTCTGGAGCCGCCGTATATCCAGAGGCACCACAGTGTCTGCACCTACAGCCGTACACGCCACCTGACAGCACGTTTACCAGGTTGTCGTCCTGGCGTCTCCCCCATCTATCATTACCCTCAGGCCTTACAGTGCGACTGCACCTACTGCTCCTCAAACCACACCGAGTGTGAGACCTTCTAAAGGCACACACACATAAATCTTCTTTGCTTATTATGCAAAGAATTATCACAGTTATTATTGTTATACATTAGAAAAAAACATGATTTAACAA

Function

symbol description
gphb5 Predicted to contribute to hormone activity. Predicted to be involved in G protein-coupled receptor signaling pathway and regulation of thyroid hormone mediated signaling pathway. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Orthologous to human GPHB5 (glycoprotein hormone subunit beta 5).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_01431872_01432826.mRNA True 2001 mRNA 0.38 3 1430400 1432917

Neighbor

gene id symbol gene type direction distance location
CI01000026_01400733_01422031 PPP2R5B coding upstream 8117 1400733 ~ 1422283 (+)
CI01000026_01394994_01396250 NA coding upstream 32538 1394994 ~ 1397862 (+)
CI01000026_01378924_01381978 NA coding upstream 47860 1378344 ~ 1382540 (+)
CI01000026_01364309_01371253 B3GAT3 coding upstream 59032 1364309 ~ 1371368 (+)
CI01000026_01354575_01360934 NAA40 coding upstream 68553 1354410 ~ 1361847 (+)
CI01000026_01449646_01450471 NA coding downstream 15941 1448858 ~ 1450471 (+)
CI01000026_01479116_01511199 EXOC6B coding downstream 46199 1479116 ~ 1511318 (+)
CI01000026_01516754_01566669 EXOC6B coding downstream 83442 1516359 ~ 1568336 (+)
CI01000026_01587300_01603806 CYP26B1 coding downstream 154383 1587300 ~ 1603806 (+)
CI01000026_01604062_01608083 NA coding downstream 171086 1604003 ~ 1609167 (+)
G126746 NA non-coding upstream 40367 1389823 ~ 1390033 (+)
G126603 NA non-coding upstream 45877 1330982 ~ 1384523 (+)
CI01000026_01300881_01338917 MARK2B, MARK2 non-coding upstream 103210 1300881 ~ 1339688 (+)
G126733 NA non-coding upstream 167996 1262190 ~ 1262404 (+)
G126752 NA non-coding downstream 5997 1438914 ~ 1439149 (+)
G127402 NA non-coding downstream 279462 1712379 ~ 1712666 (+)
G127405 NA non-coding downstream 282745 1715662 ~ 1716279 (+)
G127417 NA non-coding downstream 302950 1735867 ~ 1736127 (+)
G127436 NA non-coding downstream 327548 1760465 ~ 1760771 (+)
CI01000026_00776867_00777588 NEDD8, BRAFLDRAFT_284180, NEDD8L, NEDD8.S other upstream 652603 776757 ~ 777830 (+)
G126556 NA other upstream 675237 754791 ~ 755163 (+)
G127500 NA other downstream 498266 1931183 ~ 1946439 (+)
G127531 NA other downstream 876405 2309322 ~ 2312135 (+)
G127519 NA other downstream 960766 2393683 ~ 2427006 (+)
CI01000026_02659356_02660297 NA other downstream 1226298 2658605 ~ 2660829 (+)
G127979 NA other downstream 2319634 3752551 ~ 3762986 (+)

Expression


Co-expression Network