CI01000027_07545610_07559939


Basic Information

Item Value
gene id CI01000027_07545610_07559939
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7545610 ~ 7560158 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07545610_07559939.mRNA
GGCGTCAAGCGTCGCCCCATTTGGATTTAGAAAAAACGGTTTGCGGATCCTGCGCTATTTGCAAACTGCACCTAAACTCTTCTGCAGACCCCAGACTTCTGCCCTGCCTGCATACAGTTTGTAATACTTGCCTTACGAAGATCTGCACAGATGGAGCCACACAAGGCTCAAACTGTCGCGTAAAGTTAGGTTTAAATGACTATGTAGGTCTGACGATTATTTACATAAGGAGTCTCAAAGTTAAATACTTGGGTTTTGGCCAGGTCGTGTTATCCAGAAACAAATACGTCTATATGGTGTTCTCCACTGGGGATTGTCCATTATGTGCTCAGACCTTTTGTTTGTCTGAGGTCACAGAATGTGCCATTTTTGAAGACGACTCTAATAATAACAAGGCCCCCAAGTGTGCTGGGTGTGAAGAGAGTGAGGTTAGTGGATGGTGTGTCCAGTGTGAGGAGGCCCTGTGTTTGGACTGTATGTCTGCCCATCGTAGGGTAAAAGTGACCCGTGACCATGAAGTCACACCAAAAAAACCACCCACAGGTTGGATACAGAGAAGACGCTGTCCTTCACACACTCAGGAGAGCTTGAGGTTCTTCTGTCTTGTTTGTGAAGAGCTCACCTGTAAAGACTGTCAGCTGATCACTCATAGAGGCCACAGTTTTGTGCAACAGGAGGAAGCTGTGGGATCTCAGAGACAGCAACTACAGAGTTTGTTGGACTCCATCAGACATCAGAAAGAGATGATCAGCAGTAGCCTGCTGCTCCTAGAGGCAAGGTTACAGGACATTGAGAATCTAAAAGTGGCTGCAAAAAAGATGTTGAGACAGGTGGTCTTCTCCCTTTATCAGGCTCTGGTACTGAAAGCTACGCAGATCTTAAAGGAGATAGAGGCCCTGTATGCAGAGGAGGGGAGATGTTTGTTGGAGCGGAAGACATCTCTGAACAGGCTGGAAGGCTTTCAAGACTACATAGTAGCTTTTATTGACAAGATCCTAAACACTGAGGGCCATTGCCTCCTGGTCCACACAAAAAGAATTGAGACCCAGGTGAAAAAGCTGCTTTCCCAGGAGACACGCACTCCTGAGACCATGATTAAACTGCATGTTCAGATTCAGAACGATCTCTGTCAGCAAATGGTCAAATTTGGATTTTTAAAGATTAGAAAGACTCCTGTTCCTTTTACTTCTCTGAGAACTGGTTCCGCTCAGTCAAAGTCTGTGTCTGTGGAAAGCTCAAGTTCTGTAGTAACTCCCACGGATGTTCATCCTGTACCGGCCTCATCAAGTGTTGATACACAGGTTCAGGGTAAATGTGTTGCTAACGGCACTGCACTGCGTTCATGTGCTTCCTCTCAGACTGTACAAATGAACCAGGCCCTTAAGAGTTTGCCTCATCCATCTCAGCCCAGCAAGCCATCTCAGCCTAACCAGGCCACACAACCCTCATTCCAACTAAATCAATCTAAACTTCCCTCTTCAGAACTTCAGAATTCATTTTCTTCCTCATTTTCTTCCAATCCTGGGCAATCCAAGCATGCTTACACTCCCTCATCACAACGTGTCCTATATTTTCCTAACTCTGCTCACAAAACTCAAATAAATCCTCATCCATCTGTTAATTTTCAGCCTTGTCTTCCACACACAGCGTCTCAAATAGACGATATCTCCAAGCATAGGACGGCCTCGACCTTACGCTATTACCCTCCCATCACCCACCCAATGCCAGTTAACAACCAAACACCTAAACTAACTCATCCAATACCTGCCAACAACCAAACACCTGTACTAACTCATCCAATACCAGCCAACTACCAAACAATAGTACAAACTCATCCAATACCAGCCAACAACCAGATACCCCTACTGACTTATCCAATACCAGCCAACAACCACACAACAGTACTAACTCATCCAATACCAGCCAATAACCAAACAACAGTACTAACTCATCCAATACCAGCCTACAACCAAACATCTGTACTAACTCATTCAATACCAGCCAACAACCAAACACTTGTACTAACTCATCCAATGCAAGCCAACAACCAAACACCCGTACTAACCCAGCCAGTTTCAAACATGCCAACTGACACCCAAACAGTTTTACTAACCTATCCAGTACAAACCAGTTTCCTGGGGCCTGCACATACTTTTGCTGCACAACAAAATATTCCCATAACTGTTCTTTCTAACATAAATGCTCTTTCTTCAAATGATACTGCAATCTCTAATGTACACTCTGCTGGACCCTCCAATGGTGGGATGAATCATTGTTCCCATGACCCTTGTGCACAGAATACCACCAGTTCAACCTTTAAAGCAATCCAAAGCACAGCTAGTGGTTCTTCACTTCCTGTAAACCCAATGCATTCTGCTCCCATTAGTGGCAACAAAAGAAACGCCTACAATAGTGCTAACCTTCCAGTCAAGGCCTTGGCTGACTCCGTCTGTGATCAGGACGCAGGTGTGAGCAGCACAAATTTCACTGATACGGATAATTCGGAGAGCAACTTGCCCTCTTCCACTGTGTCAGAGACAGATCCCAAAGAATCTTCGCCAGATCCTGCCCACTCCTCTGGCCTATGCAACCTTCAGCAAGACCCTCTCTCCACCACCACAGAGAAATGTTCAAGACAAGCTCAAGCCAGTCAGTCATTCACCAAGAGTGACTCTAGACCAAGACACTGGAGCGTTGGCTTGCCAACAACTTTTCGTCAGCTTGTAGAGACAACACCTGTCAGCTCCACAGACAATAGGAACGCCACACCTCCAGCGAATTCAACTCCATGTGGCACATCAGATGACCTTGCAGGGGAGAGGGAGATACATGATAAGACTGTCCAAAGTGTTTTTTACCACAGAAAGGAAGAAGAGGAAGAAAAAGAATCTGCAGTGTCTGTGGAACAATTCAAGAAACAATTCAAGAGGTTTCCACGTGTATCTCTGGTGCGCCTGCCCATTTCTTTGCCTCCATGTGGGCAGCCACTCCCAGAGTTCCACCTTACTGCAGATATCTCTAGAGACCACATCATGGTGCAGGAATCCCAGGGAGGACAGATTAAGCAGGTGTGGAGATGGCACGAAGATCCAGTGCCATCTAGAGCCTCTTCCTGCTCTATAGTGCAAAGCAGCGACAGCTCCCCGGCATCTGACGTACAATTCTGTGCAGTGTGTCAGTCTGCAGGAGCTGCCCTTCTGTGTGTGAAATGTGGATGTGCTTTTCACTCTGATTGTCACATACCACCAATCCTCACAAAACCTTGTGAGGATTGGGTGTGTTTGCTGTGTCAGGATGTAAATGAGACAGTCGTGTATGGCAGTGAGGAGATGAGGACGTCCAGTCTGAGTCTACAAGATCAAAGAAAGTGTGAGAAGCTTCTCCTTGGTCTCCTGTGTGATGAGAACAGGTGCCTGCTCTACAACGCCACCAAGAATCACTCAAAAACAGCTGAATTTGATATAATACTTGGCCGACTCCTGGGGACAAGGAAGCCGCCTTATCGGACTGCTGCTGAACTGGTGTCAGATGTTTGGACTCTTTTTGACATCTTGATGATGAACTCTGAGAGGAAAAACTTGGTTGTCAAACTTCAAGAATCTTTCCAGCAACAGCTGAATGAATCTTTTGGGAAGAGTCTTCACGCGTCTCTCCTGAAACACTCCAGCAGTGAGGCTCCAAGAAGTACTTCAGAGACAGAGACTCAAAGAGAGAAGCACAGAAACACTTTGAAACGCATGAGAGAGTTTTTTATGGAAAACTGTGGTACAGCAGCAAAGAAATCCTGCACTTACAAAGGGAAGGAGAAAGATTGCTGTGAGAACACTACAGCTGCTGTGATACCAGCAGAGGGCGCGAGGACCCTTTGGTCGATTGACTTGGCTCTATTTTCACTTCCAACTTCTTTGCTCTATTTACCATTTGTGCTACGGACATTAATGACCAGTCTATTCGTAAAACTTGCAGAGGAAAGTCATTACTAGGATTTTTGCCTATGAAAACCCCCCCAGGTATAATTTAAAAGCACTCGAGCCATTATCATATGGAAAATCGTGCTTTGGAAATACATGATTCGTCAAATAGGCGTCATTCGTAAATGCAGCATATTATTATGAAACACAGCTTTTTGAAAAAGGACATTTAATTATGAAAAACACAATAATAGTGTGTGTGTAAAAGGATATTGTCAAATATATTAAACA

Function

NR:

description
Trim33 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07545610_07559939.mRNA True 4202 mRNA 0.45 19 7545610 7560158

Neighbor

gene id symbol gene type direction distance location
CI01000027_07541256_07541975 NA coding upstream 3458 7541256 ~ 7542152 (+)
CI01000027_07529488_07537870 DCST2 coding upstream 6499 7529488 ~ 7539111 (+)
CI01000027_07469157_07471720 NA coding upstream 73611 7468964 ~ 7471999 (+)
CI01000027_07455850_07459062 NMT2, NMT1 coding upstream 86548 7455850 ~ 7459062 (+)
CI01000027_07432479_07451012 FAM171A1 coding upstream 93598 7432479 ~ 7452012 (+)
CI01000027_07561011_07562818 NA coding downstream 733 7560891 ~ 7563845 (+)
CI01000027_07605090_07608785 NA coding downstream 44702 7604860 ~ 7609540 (+)
CI01000027_07618538_07623119 NA coding downstream 57127 7617285 ~ 7624255 (+)
CI01000027_07634015_07663101 NPR1B, NPR1 coding downstream 73806 7633964 ~ 7663410 (+)
CI01000027_07666350_07684399 GON4L coding downstream 106192 7666350 ~ 7684460 (+)
G141380 NA non-coding upstream 9277 7536117 ~ 7536333 (+)
G141378 NA non-coding upstream 15608 7529799 ~ 7530002 (+)
G141330 NA non-coding upstream 30731 7502066 ~ 7514879 (+)
G141364 NA non-coding upstream 44123 7501157 ~ 7501487 (+)
G141355 NA non-coding upstream 211473 7333909 ~ 7334137 (+)
G142360 NA non-coding downstream 156962 7717120 ~ 7722230 (+)
CI01000027_07789066_07797594 NA non-coding downstream 224616 7784774 ~ 7800723 (+)
G142446 NA non-coding downstream 244384 7804542 ~ 7804806 (+)
G142452 NA non-coding downstream 253502 7813660 ~ 7828067 (+)
G142465 NA non-coding downstream 270834 7830992 ~ 7907635 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 587843 6951132 ~ 6957767 (+)
G141082 NA other upstream 644687 6898411 ~ 6900923 (+)
CI01000027_06706050_06708485 NA other upstream 834978 6705983 ~ 6708513 (+)
G141052 NA other upstream 1274010 6271367 ~ 6271600 (+)
CI01000027_07947743_07951397 NA other downstream 390545 7947657 ~ 7951942 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other downstream 466239 8025788 ~ 8032041 (+)
CI01000027_08255251_08264629 NA other downstream 698179 8255073 ~ 8264897 (+)
G143033 NA other downstream 2168657 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009998 trim33l coding NC_007127.7 CM002900.2 28764017 ~ 28790417 (+)