CI01000027_07561011_07562818


Basic Information

Item Value
gene id CI01000027_07561011_07562818
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7560891 ~ 7563845 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07561011_07562818.mRNA
GTTTAAAATCGACACAACTTCCATAAGCCCCACCCACTGTTTTATATATATAGTTGAAGCAGCTTGCGAAGCTCACACACAAAACTCAAGACGTTCGTAAGGGTCACTCCTATACATGAAATGGTTGTTCTGGTCAAACAGAGTCCTCAGTTGGGCAGCAAAGCGATGGATGGAAATCAGCACAAAGTAGATGCGAATGTTCTGCTACTTGGAGCAGAAAATGTTGGGAAGTCAGCCCTCACCGTGCGATTTCTCACCAGAAGGTTCATCGGAGAATATGGGGATATTGAATCAATATACAGTCATACTGACAAAACAGATGGGCGAGAGATATCCTTAAATATTTGGGACTCTCTGTATCCACAGAGCTGTGAAACAACTGAATCCATCAGTGACAAGCAGCTTCAGTGGGCAGACGGCGTGATCCTGGTCTACAGCATCTGTGACCGCTCCAGCTTTGAGGTGGTCCGGCAACAGGTGCAGCTCATCCGCCAGACTAGGAAGCTGTCCGCATCGGCACCGATCATCATTGTAGGGAACAAGCGAGACCTGCTGCATCAGAGAGCCGTGTCGAGCGAGGAGGGCAGACTGTTCGCCCTCTCCGCAGACTGCGGCTTCTTCGAGATCTCGGCAGCTGAAACCTACCACGGCGTGCTTCTGGTCTTTCATGAAATACTGGATCTCATCAAGGAATCCAGAGCACTAAAAAAGGGGATGGTCGGAATCAAGGGCATAGTCAGAAGCGTGTCCGCAGTGTTTGGAAAGAAATGGGAGTAAAGAACTGAGTTGGGGATGTGAAAGATGATGAGCATGATGAAGATATGAGGCCCCTGGCAGCCTAGCGTCTAAACAGCTGAGAAGAGGACCCTCGGCCGATGGGTTTTTGGAACCGAAGAGGGCCACTTTTGCCAAATTAATGTACATGGACGGTGGAAAGAAAAAGAATAAGATGATAGCATGTTAAAAGTTCAGAGCCCAGCTTTATGGTGAAGAAATGTAGATTAAGTTTGTTACAGCAAGGCGATAAAAGAAGTGCTGAAGATAAGTGGCTTTGATTTAAGTTGGTCACAGGGTATTGATATGAACCAAGAGACAGCCCGGATGTATTGTAGTCCTTGTCATTTCTCAAAGAATGATCTTTCGGCTTTGAACAGATGATGTAGACGATTCAAGTGAGCTTCAGCTCTGGATCTCAGATGCCTGAAATATAGAGTTGGACTTTATCCTCTCTGCATTGTCCTCTTCTGAATCTTCACTCACATTTAGATGTGAATGATTAAGTGTGGTAATTGGAAGGAGACTATATATAGTAAAATGTATATAGATATTTTATGTATATATTGTAATTTTCGGAACATTGTTTTCTGAGTTATTCGATTAAAGGTATGTTCACACCAAGGATGATAGTTGTAACTATACAGTTTTAATAATCGTTCTAATTCCATGAGAATAGCAGAGTCTACAACACAATTATAATGATAACACGAACAATATAATCGGAATCACTTTCAGAATGTTTTTTGAATGATAAAAACATGGAGAATCCACCCGAGGAGCTTGAGCATTTAAAGTGGCAGAACTTTATGTTCCCTTGGTGTGTACACCAATATAGTTATTGTTAGTTATCGTTATAATTATTTGTCATGGTGTGAACAATCTAACAACTGAAGAATGAGATATTAAGAGTGTCTGTACATTGCCCTGTATATACTGGAGTCTTTCACTTTTTGTATAAATTATGCTGTTTTTAGTTAAAGATCTTTTTGAGATGTTTATACTGCTTGTATTTCAACGATCGATTTCA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07561011_07562818.mRNA True 1804 mRNA 0.42 4 7560891 7563845

Neighbor

gene id symbol gene type direction distance location
CI01000027_07545610_07559939 NA coding upstream 733 7545610 ~ 7560158 (+)
CI01000027_07541256_07541975 NA coding upstream 18739 7541256 ~ 7542152 (+)
CI01000027_07529488_07537870 DCST2 coding upstream 21780 7529488 ~ 7539111 (+)
CI01000027_07469157_07471720 NA coding upstream 88892 7468964 ~ 7471999 (+)
CI01000027_07455850_07459062 NMT2, NMT1 coding upstream 101829 7455850 ~ 7459062 (+)
CI01000027_07605090_07608785 NA coding downstream 41015 7604860 ~ 7609540 (+)
CI01000027_07618538_07623119 NA coding downstream 53440 7617285 ~ 7624255 (+)
CI01000027_07634015_07663101 NPR1B, NPR1 coding downstream 70119 7633964 ~ 7663410 (+)
CI01000027_07666350_07684399 GON4L coding downstream 102505 7666350 ~ 7684460 (+)
CI01000027_07686575_07690215 GPATCH4 coding downstream 122730 7686575 ~ 7690347 (+)
G141380 NA non-coding upstream 24558 7536117 ~ 7536333 (+)
G141378 NA non-coding upstream 30889 7529799 ~ 7530002 (+)
G141330 NA non-coding upstream 46012 7502066 ~ 7514879 (+)
G141364 NA non-coding upstream 59404 7501157 ~ 7501487 (+)
G141355 NA non-coding upstream 226754 7333909 ~ 7334137 (+)
G142360 NA non-coding downstream 153275 7717120 ~ 7722230 (+)
CI01000027_07789066_07797594 NA non-coding downstream 220929 7784774 ~ 7800723 (+)
G142446 NA non-coding downstream 240697 7804542 ~ 7804806 (+)
G142452 NA non-coding downstream 249815 7813660 ~ 7828067 (+)
G142465 NA non-coding downstream 267147 7830992 ~ 7907635 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 603124 6951132 ~ 6957767 (+)
G141082 NA other upstream 659968 6898411 ~ 6900923 (+)
CI01000027_06706050_06708485 NA other upstream 850259 6705983 ~ 6708513 (+)
G141052 NA other upstream 1289291 6271367 ~ 6271600 (+)
CI01000027_07947743_07951397 NA other downstream 386858 7947657 ~ 7951942 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other downstream 462552 8025788 ~ 8032041 (+)
CI01000027_08255251_08264629 NA other downstream 694492 8255073 ~ 8264897 (+)
G143033 NA other downstream 2164970 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009999 zgc:171704 coding NC_007127.7 CM002900.2 28792158 ~ 28796865 (+)