G140167


Basic Information

Item Value
gene id G140167
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3746879 ~ 3750039 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159307
TATAACATTTCTACACTTATGAAATTCCATATGAAAAGAATGCATATAAAAAAAACTACCTAGTAGTTGCTTTATTAACTACATTTCACATTCTAATGCAAAATAAATAAATAATCATGAGAACCGTAGAGAGGCCCACACATGACATGCAGGAAAAAAATATGTATATCGTGGCCACAAATTAACAATTCGTTCCCTCTACTTATTAATATGTCAGCACGTTTTGCTAATTCGTTCCCTCGTTTTAAGTAAATTGTGCACACAATATAATAATTTGTTCCCTTGATTTACTAAATTGTGGCCACATTATAATAATTAGTTTCCTTGTTGTATAGTAGTCACCATTTGAAGTGGATCAAAAAAGTTAATCAAAGTTGTCCTAAGAACTAAGTTGTCCTAAGAAGAAGGTTTTAGGACAACTTTGATGAAAGTTTTTGATCCACTTCAAATATTGACTACTGTAGTTAAATCAATATGAGGGTACGAATACGTGGCCACGATTTAGTAAAACGAGAAAACAACATGATTTTAATGTGCAAATGCAATGCAGTGCTCCACTCCTCTCAGCTAAGAACAGGAAGCTGAAAATATACTGGACATGTGATCAAAACTGAGTGACCTGGCAATTTCTGGCACAACATCAAGATAATGGAATAAGAATTTGTGGCAAGCAGCAGGAACTCATGGGCTCACCCTGCCCTGTTTATATTAAATGCAGCAGGGAGAGTTTTAGTCTAGACATTTAAAAAAAAAGAAAAAAAAGAAAAGAAAAGAAATGTTACATACAGTGTAGTTTTTGGGTGCATTGGTGCTGATCAAACACATTTTTAGCAACTTCTCAATATACACCATATTTCAGTAGCTATGTTTCCATCCAAATTTGCTAATTTAACTTGTGCGCAAAATTGTCGCATTAAACATTTGCAAATAAAGCAGCGTTTCCAACCCATGTGTTCAAAAAAAACAAAATAGTCACTTTCTGGGAAATTGGCGCAAAATATCTGTAATGAAAATGGAAGATGCTGCAATTGGGAAAGCCACTGTTGCTCTTTTTTCATACATTATAAATGACCGGCGAATCAGAGTGCACAGATGATACGCAATAAACACTGTTGTGTTATCTTGCGTTCAGATGCCTGGTGTTTGAGGAATACAATCATGTGAGACGCTTCTGGGAGGGAATTAAATCAAATCATTTTGATGACAGACTTTGGCTCAGGCATTTCAGAATGACCAAACCAACATTTGAGACGCTGTGCAATGAGATTGGTCTGCTGGTTAGTCCAGTTATCCAATCACATCCACTGCTGAGGCAAAGTTACGTGAGATTTTGTTGCGCATTGAGAACGAGATAGAATTTATGTACGTCTTGGCGTTTCCATCTAGCATTTTTTGCAATATCCCAAAATGTGCATAAAAATAGGTGGATGGTATATTGATACGTTACTGTGGCAAGCAGGGCAGGGCCAAGAGCCGTAGGAATAGAGTGAGGTGGGTGCCCCACACTGGTCTTGAGTCTCACGGAGAATCTCCGGAAGCATAAAATGGGGAGTGACGACAGTGAAGGACGAGAGAGGACCAGGCCTGGGACTTTATGTTGTTGTTTTGATTTAGTTTAAGCGGCAGTCGTCTGTGATTTGTGTTTATTTTATCATTAAAATTATGCAGAACATTCACCGGTCCCTGAATGTGAACCTCGTTATAGTTACCTAAAATGACACTATAAAAAGCTAAAAGAGGATAAAAAAAAAAAAATGCAAATTTCAAAAGTGTGTTTCATGTATTTATTAACATTTAAAGTGTAATTAAGCTGTGGAAAATCTAAGTCAAAATGTCTTTATTAAGTCCTCTTTGTTTAATCCAATCCAAATACCTCCTCAAATGTCCTGCGTGGCTCTACAAATTTGTCTTCTTCCTCCACCACCACAGCTGAGTCTGGCACAAAATGATGTGATCCAATCTCAGTCTCTGGTGGTCCAATCTCTGCAGGTGTGGTTATTGGTGGGGTTATTACTTGAACAAAGCCTGTTCCCACCTCCTCTGGCAGGAATGAAGTTGTTTGCTCTTCCTCGAATATGTTCAATTCAGACTCCATGATCCAGGGCTCACTGGTGATGACCTTACTGGACACTGTACATGGATTCATGAAAAAGGGCTTAATGTAAAATCTTATTACTTCCATGATGTGGCAAGACTTTTACAGGCAATATTGCATTTACTCTCAATGCCAGGGGTCTTCAAACTCGGTCCTGGACCACTGTCCTGCAGAGTTTAGCTCCAACTTGCCTCAACACACCTGCCTGGAAGTTTCTAGTACGCCTAATTAGACCTTGATTAGCTGGTTCAGGTGTGTTTAATTGGGGTTGGAGCTGAACTCTGCAGGACAGTGGCCCTCCAGGACTGAGTTCGGAGACCTCTGATGCTATGAAAAGATCTATATACCAACAACATACTTCATGAAAACCAACTGACTATTAAAATTGATAAAAACACTTGAGGTTTCTCACCAGACAGGTCAGAAGACAGACACGTGGAGTCGCAGCAGAGGCACACACCATTTGAACTGTATAATTCTTCCCATCTGAAGAAGAAATGATCCGAATTAGTAGTAATTCAGTTTTGAATTATCACAACAAACTCACAAAACAACCAAAACTCAGTATACCGTTTTGTTGACTGGTTGTAAGTGCAGGACTTTGCACTTGCCGTTGGATTTAAGCTTCCGACAGATATTTCACAATGCATGTAAAGATGCTGAGAATAAAAAGAACAGACAACCTCAATAAATTGACTCAACTGTTATTCTGATTAAAAAAAAAAAAAAATCAAAAGCCTGACCCCCTTGTTTGACATTTTTCTGAAATTGTATGACATTAGCATGACATTTTGGCTCATTTTACCTTTCCCAACATCCCGTGGAATAGAAATGCATCCAATGAGAACCGCACAACATTCCTTTGTCCACTTTGAATGAATCTGGACCACTTACTGCTCATGCTATCAATCATGCACCTGAAACAAAAATGCACATAAATTTTGTCTTCAATTTACCCTAACCCTGTAAAGTCTGGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU159307 True 3073 lncRNA 0.38 2 3746879 3750039

Neighbor

gene id symbol gene type direction distance location
CI01000027_03694455_03710634 NA coding downstream 35840 3694227 ~ 3711039 (-)
CI01000027_03689861_03690969 NA coding downstream 55668 3689439 ~ 3691211 (-)
CI01000027_03513546_03521352 NA coding downstream 225527 3512392 ~ 3521352 (-)
CI01000027_03501726_03510058 NA coding downstream 236821 3501120 ~ 3510058 (-)
CI01000027_03492624_03493292 NA coding downstream 253587 3492500 ~ 3493292 (-)
CI01000027_03750919_03761043 FLI1, FLI1B coding upstream 791 3750830 ~ 3761063 (-)
CI01000027_03787377_03788902 NA coding upstream 37338 3787377 ~ 3790279 (-)
CI01000027_03832200_03836030 NA coding upstream 81166 3831205 ~ 3836530 (-)
CI01000027_03898513_03905519 NA coding upstream 147227 3897266 ~ 3906494 (-)
CI01000027_03922380_03931033 NA coding upstream 172203 3922242 ~ 3931033 (-)
G140218 NA non-coding downstream 3485 3743148 ~ 3743394 (-)
G140217 NA non-coding downstream 4868 3741247 ~ 3742011 (-)
G140209 NA non-coding downstream 42699 3702913 ~ 3704180 (-)
G140208 NA non-coding downstream 45707 3700260 ~ 3701172 (-)
G140207 NA non-coding downstream 46745 3699930 ~ 3700134 (-)
G140220 NA non-coding upstream 23475 3773514 ~ 3774550 (-)
G140221 NA non-coding upstream 24817 3774856 ~ 3775080 (-)
G140262 NA non-coding upstream 52676 3802715 ~ 3805429 (-)
G140237 NA non-coding upstream 73865 3823904 ~ 3824438 (-)
G140267 NA non-coding upstream 99321 3849360 ~ 3849642 (-)
G140118 NA other downstream 162200 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 1518854 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 1620851 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 2426718 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 2499902 1240478 ~ 1246267 (-)
G141481 NA other upstream 622208 4372247 ~ 4412810 (-)
G141488 NA other upstream 757436 4507475 ~ 4508971 (-)
G141728 NA other upstream 1127028 4877067 ~ 4877766 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025921 NA non-coding NC_007114.7 CM002887.2 269052 ~ 275465 (-)