G147636


Basic Information

Item Value
gene id G147636
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 5216090 ~ 5216611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU167681
TGCTAAGGGTACAGAATGACTTCACCGCATTGAGGGGCCGATGGGCGGGGCCATGTACCGTAAAATTCTGGATGAGAGCCTCCTTCCCTCAGCCAGAACACTGAAGTCGGGTCATGGATGGGTCTTCCAGCATGACAATGACCCAAAATATACCACCAAAGCAACAAAGGAGTGGCTCAAGAAGAAGCACAATAAGGTCATGGAGTGGCCTAGCCCGTCTCCAGACCTAAATTCTATTGAAAATCTGTGGAGGGAGCTGAAACTTCGAGTTGCCAAGTGACAGCCAAGAAACCTTAAGGATTTAGAGAAGATCTGTAAAGAGGAGCGGACCAAAATCCCTCCTGAGATGTGTGCAAGCCTATAGTGACCAACTACAAGAAACGTCTTACCTCTGTGCTTGCCAACAAGAGTTTCTCCACCAAGTTTTGCTTGAGGATCAAATACTTATTTCACTTACTGAAATGCAAATCAATTTATAACATTTGTACAGTGTTTTTTTAAATGGATTTTTTGCTTGATATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU167681 True 522 TUCP 0.44 1 5216090 5216611

Neighbor

gene id symbol gene type direction distance location
CI01000028_05178115_05181202 FZD9B, FZD9 coding upstream 34870 5176425 ~ 5181220 (+)
CI01000028_05120588_05127452 GRK7B coding upstream 87061 5120183 ~ 5129029 (+)
CI01000028_05114584_05116494 RNF7, RBX2 coding upstream 99028 5113518 ~ 5117062 (+)
CI01000028_05039088_05063207 NA coding upstream 152883 5039088 ~ 5063207 (+)
CI01000028_04729544_04888382 CNTN5 coding upstream 327708 4729544 ~ 4888382 (+)
CI01000028_05488773_05490277 NA coding downstream 270421 5487032 ~ 5490635 (+)
CI01000028_05507920_05512856 ZBTB38 coding downstream 290267 5506878 ~ 5512879 (+)
CI01000028_05513089_05514983 NA coding downstream 296365 5512976 ~ 5515363 (+)
CI01000028_05529016_05564762 RASA2 coding downstream 312405 5529016 ~ 5565685 (+)
CI01000028_05619764_05627731 NA coding downstream 403153 5619764 ~ 5627731 (+)
G147635 NA non-coding upstream 68 5215225 ~ 5216022 (+)
G147612 NA non-coding upstream 68127 5147498 ~ 5147963 (+)
G147610 NA non-coding upstream 78191 5137597 ~ 5137899 (+)
G147608 NA non-coding upstream 83585 5132294 ~ 5132505 (+)
G147604 NA non-coding upstream 91673 5124089 ~ 5124417 (+)
G147637 NA non-coding downstream 1682 5218293 ~ 5218541 (+)
G147638 NA non-coding downstream 2421 5219032 ~ 5219351 (+)
G147461 NA non-coding downstream 28820 5245431 ~ 5258064 (+)
G147464 NA non-coding downstream 42258 5258869 ~ 5263908 (+)
G147688 NA non-coding downstream 191174 5407785 ~ 5434328 (+)
G147462 NA other upstream 226252 4958703 ~ 4989838 (+)
G145843 NA other upstream 2191870 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 4694159 524647 ~ 535245 (+)
G147693 NA other downstream 223843 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 2253281 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 3085636 8302247 ~ 8504940 (+)
G150398 NA other downstream 3575124 8791735 ~ 8792120 (+)
CI01000028_09661097_09682326 NA other downstream 4456516 9660747 ~ 9684876 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G378129 NA non-coding NC_047620.1 CM018566.1 18327771 ~ 18328173 (+)