CI01000030_04156234_04162950 (TMEM59L)


Basic Information

Item Value
gene id CI01000030_04156234_04162950
gene name TMEM59L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4155587 ~ 4162950 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_04156234_04162950.mRNA
ATGCTCCAGTTCGGCGGCAGGGTGCGCGGTGTTCCCGCGCTCGTCTCTATGATTCTGGTGGCGTTGGCCGCGGCATCATCTGATCTGTTTGACAACCAACTGGGCGATATCAATTACTGCAAAAAGCAATGCCAGATGTCCATCAAAAACAAAAGCCCCGCCAAAGACTCCATCATGAATGCCTGTCACCGTGGCTGTCGGCTCTACTCCATCTGCCAGTTTGTGAATGGAAATACAGGCATCAATACCAGCAAGGAAGAGTGCCAGGGAGCATGCCAGGAGGCCTACAGTAAACTTCTGGAGCAGGAGGCGTGCAGCACGGGGTGTGCCAGCCAACCCGCTGAGCCGGAGATCAAACGGAGAAAGCTCAAGGCCCTGACCAACCGGCCCAAACCCGTCTCTGTAATGGATGCCGTGTCTAGCTGGTGCAATGACATCGTCAGTTCTGCCCAGAGCTTCATTTCTTCTACCTGGACCTTCTACCTGCAGGCTGATGATGGGAAGGTCGTTGTGTTCCAGGGCTGTGACAGGAGAAGAGGCGAGAGAAAGCCTCCACAGCCATCCTGCGGCAGGCCTAGCCTGTATTTAGCGGTCAGCTGGAAGACGGCCAGCCCAAGTGAAAGACTGACACGGGCCAGAGATTGCACAGAGGGTGAAAACCCAAGGTTTTAGCGGTAGCATCACGCTACCTATCCACTAAATCGAGCATATGGAATCAGAACTTTGTCAGAATAGCGAGACTCAATTTCTGGGGGAAGTGGAGCACTAATGATGGGCTTTTTGCCTCGGGCGTCTAAACAGAGAAAGGAAAACAGATTGTTTTTCAACAGACCTGCTGTGGTGTGCATTTGGCCCAGATGATGCTGTTTTCACAGTTACGTGAAGCACCTCACAACTGGAATATAAATAGCGTGGCATGAAAACAGAATATGGAACTTTGGGTGTGCTGGATTTTGAAAGTTTCCTGCAAAAAATTGATTTATATTATAATCTGTTTGATTTTTGTGAGGAACTAATGAAACATATCTTCGAAGAGAAGTCTGGAGGGAATTCTTGCACTTCAGAAAGATCTTCCACATCACTACACAGATTTCCCTGAAGTTTCATGTTGAAAAAGTCCAATCACTAGCAAGTAGCATCGGTAGAAACCAAATGTAAAATTCTATATGAACCAGCTTATTTGGCTCTTTGATTGATGTCTGAGGTTCTCTGGAGCAAGTTCTCCTAGCGCTGACTGTGCTGGAACTTTTTAGAATATCTGTAACAGTTGAATAGGTTTCATTTGAACATTTGCGGGAATACAGCAACAGCCAAATAAA

Function

symbol description
tmem59l Acts upstream of or within axon extension. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human TMEM59L (transmembrane protein 59 like).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_04156234_04162950.mRNA True 1319 mRNA 0.48 5 4155587 4162950

Neighbor

gene id symbol gene type direction distance location
CI01000030_04036031_04051996 NA coding downstream 102470 4034609 ~ 4053117 (-)
CI01000030_04023756_04027078 NA coding downstream 128025 4023493 ~ 4027562 (-)
CI01000030_04012150_04013791 NA coding downstream 140492 4010930 ~ 4015095 (-)
CI01000030_03977684_03994541 ELL coding downstream 160871 3975838 ~ 3994716 (-)
CI01000030_03954516_03959210 DOT1L coding downstream 196377 3954133 ~ 3959210 (-)
CI01000030_04178361_04181340 NA coding upstream 15373 4178323 ~ 4181340 (-)
CI01000030_04225211_04225930 CKS2.L, CKS1B, GM12891, CKS2 coding upstream 61853 4224803 ~ 4225930 (-)
CI01000030_04229653_04232271 NA coding upstream 66648 4229598 ~ 4232873 (-)
CI01000030_04246567_04263697 ANKRD24 coding upstream 83347 4246297 ~ 4263965 (-)
CI01000030_04308370_04309677 S1PR3A coding upstream 145263 4308213 ~ 4309677 (-)
G160381 NA non-coding downstream 36451 4118928 ~ 4119136 (-)
G160376 NA non-coding downstream 40613 4114747 ~ 4114974 (-)
G160361 NA non-coding downstream 56472 4098265 ~ 4099115 (-)
G160351 NA non-coding downstream 185515 3969793 ~ 3970072 (-)
G160446 NA non-coding upstream 57902 4220852 ~ 4221109 (-)
G160448 NA non-coding upstream 63575 4226525 ~ 4226746 (-)
G160400 NA non-coding upstream 79283 4242233 ~ 4245333 (-)
G160449 NA non-coding upstream 96570 4259520 ~ 4259913 (-)
CI01000030_03491770_03493119 CELF5A other downstream 662487 3490119 ~ 3493741 (-)
G160213 NA other downstream 686425 3466353 ~ 3469162 (-)
G158980 NA other downstream 1623023 2499584 ~ 2536375 (-)
G158914 NA other downstream 1703869 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 1996296 2155584 ~ 2157390 (-)
G160713 NA other upstream 1256169 5419119 ~ 5423513 (-)
G160712 NA other upstream 1294010 5456960 ~ 5512074 (-)
G160949 NA other upstream 1634347 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 1970425 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 2538105 6701055 ~ 6704745 (-)

Expression


Co-expression Network