CI01000030_03977684_03994541 (ELL)


Basic Information

Item Value
gene id CI01000030_03977684_03994541
gene name ELL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3975838 ~ 3994716 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03977684_03994541.mRNA
ACATCATTGTTTTTACTGACTCATCAGGAACTGCACGTTCACACTCCACCATGGTTCACAGCATCTCATGTGAGATAAGACTGCCTGCTTGCTTGCTGGATTAAGGCTGTATTTCTTTATAGCTGCATCAGAGCTTTTGTGGCATATTATGAGCAGACCGACAACATGAGAAACCATGACGTGCTATTTGGCTGCAGCTAACCAGAAAGGATGGAGAGGCAGTCGCACATGTTCCTCAACACAACATGCGTTTGTTTTCAAGGCCCATCAGCCTTGCATTGGTAACCAATTGGTTGGGTTGAAATTTGCACAGCTGCAGATTTTGACCTTTGGCCAAAGGGCAGACAGCTGTGAAAAATGTATGTCTCAGTGCAATGGCTTATCTTGCGTTATTGGAAGACTTGGCAAACAATGCGCTCTGCAGAGAGCGTTCTCCAAGATCGTGCTGATCTGCTTGGCGAGAGCACAGAGTGCTATCTTTGCCATTATTGTGAAAATCTCAATACCGCAGTCAGAGAATCCAAATGAGCTGCGAACGTTTACGTTCTACCTGTCCAATGTGGGGAAGGACAATCCCCAGGGCAGCTTCGACTGCATTCAGCAGTATATTACAAGTGAAGGGAGCATAAAGCTGGACTGCCTGGGAGGGATCCAGGACAAAATCACGGTATGCGCCACAGACGACTCCTACCAGAAAGCCAGGCAAAGCATGGCTCAGGCCGAGGAGGAGACCCGCAGCCGTGGAGCCATCGTCATCAAGCCTGGCGGGAGATACGTGGGTAAGCGTGTACAAATCCGGAAGCCGATAACAGGTGCATCCGATGTGGCTCCGTTGCGGCGGATCTCGCGGCCGGTTATCATCTCCAGCAGTCAGAAAAAGAGCCCGCCACGGCCGCTGAGGGAACGGCTAGTGCATTTACTGGCCCTCAAGCCCTACCGCAAACCCGAACTGTTGGTGCGGCTCACGAAGGAAGGCCTGTCTCCTCAGGACAAGGAGACGTTGGACAGCCTCCTGCAACAGGTGGCTAACCTGAATGGTAAGGACAACACCTTCACATTGAAGGATTGTTTATTTAAGGAAGTTCAGAAGGACTGGCCTGGTTACAATGAGGTGGACCAACAGATTCTGAAGAGAATTCTTGTACGAAAACTGTGTAAGCCTCAGAGCAGTGCCCCTGTGTTAGGGGAGAGCCCGGTCAGCCCGCACAAAGAGCAAGCCAGCAGCTCACCCTCTCAGAAACGACCTGCAGCAGAGTTTATCGATCCCCTGGCCAATAAGAAACCCAGAATATCGCATCTAGCTAGCAAGTCTACAGGGCTCATCAATGGCAAACTGAGCTCATCCAATGGGAAGGACCCTTCTAGTTCTCAAGCAGCAGAGACATCGTCGAGCTCTCAATTCCCTCCGCTGGAGATCCCCCGACCCTTCGACCCCCTTTCGGATGTCAGCAATGACTCCAACGGTAGAGACTGTGAAAATCAAGAGGCGGCAGTGGCGGAAAGACTGAGTCAGCCCCCGTCATTCGCCCCTCGCTCCACAACACAAGAGGAAGGTCTGGACTCCACATCCCTAACCCACAGCAGCCTGGACGGATCTCAGACCCGGACCGCTCAACCCTCACTGCATGGCAAGTCTAAGAAGAAGTCCAAAAAACACAAGGACAAAGACAAGTCCAAGGAGAAAGACCGAGAGCGGGACATGAAGAAGGAGAGGAGAGTTGATGAAGACCATGGCTTGGATCAGAGGAAAACCTGTGATGTCACAACAAGCGATAGGAGGACAGGTCTAAACGGAACATGCAACAGCTCCAGTATTCCTGCATCTTCATCGGAGACAACAGACTATTTATTAAAGTACACCGTGATAAGCTCGCAAGAGCAACGTCAGACTTACAAGAACGACTTCAACGCAGAGTACAGCGAGTACCGGGGCCTCCATTCACGGATAGAGAGCATCACCCGACAGTTCACTATACTCGACTCTGAGCTCAAACAACTCCAGCAAGGCACAGACAAGTACAAGACAATCCACAATCAGATACTTGAAGAGTATCGCAAAATAAAAAAGACTAATCCAAACTATAGCCAAGAGAAGAACCGCTGTGAATATCTACACAACAAACTGGCACATATAAAAAAACTGATAGCAGAATATGATCAACAGCAACTTCAAAACTGGCACTAATAACAAGATTTTTGTCTTTTTTTTTTTTTTTTTTTCCTCTTTGTCTCCCTTGAGAAAAGGAAAACTCTGGATTATTTTTTTGTTTGTTTTTTCTTTGCTTTTTCTGAAAACAAGTTGCTCTAATGTAAAATGCCACGAAACTGATTTCTTTTTCCCCTCTGTAGTGGGCCAAGTGCTCTAGTAAGGACAATGCAGACCCATGAATTTCATTTTTTTTTTGTTTTATTTTTTTTATGGGACTTGGGACATGGGCATACTCTGCTATGCTAACCTGTGTAGCCTAATGCATTATGGGATTGGTTGCCAGCTCCCTTCCCTTCTCAAAGGTCTGAAAGAAAGTGTGAAAGAAAAAACGTTCTTTGAAGATCTTTTCCAGGCTTTCCAAACAGGGATAACCAACACCCATTCCCAGATTCTCATAGTTGAAGGTTTATGAAAAGGAAAAAAAAAAAATGAAATGGATTTTTTTTTTTTTTTCTCTATGTACTAAAATGGAAGGTCCTAATGATAAACTATATTTTATTTTCTTTTATATTTATTTTTTTCTTCTTTTTTGTCTTCCATCGGGATACATCAGTCCGATTATAATTTCACACTCAGATTGAGTGCTAAACATCTTGTCCCATCCCTTTGGTCTTTATTTCCTTAATCAGTCAGTATTTTATGCAAAAGCTGCCTTAGATTTCAAGAGATCCCTATCGCAGTACACCTTTCCCCATATTTTTTTTTTTTTTTTTTTTTTTTTCTTTGTTTTTTTTTAAAGAGTGCTGTAGTGTCTGAAATAGCACTATCTGGCTCCTTTGTGCAATGCGCTAGACCACGTGCAATGGACATGAATCGGATGCCTATCCGAGGGAGATCACCGTCTGTTTAGAGGCTTTGACAGTATCAGTATTAAGCGACGGCCATGGTAAAGCTCCATACGGATGAACTTGCCATTCCAGAAGTGAGGGTAGCGCTTCGGTGTCGGCACATTTTTGCAATATTACATGCTTTTGACTGAAAAATATTTCTTTATCACAACCCTCATCATATTATTGAATCATGAATCAGGTGTGGTTGTAAAAAGTGCAGGCATATCTTGCAAAATTGTGCCTCATGTGAGCCGTGCGTCATCCCTCAGGTATCTACAGTAATCCAGTATTGCTGGTTATGAGTGTGACGGTAACATATCACGTTTGCGGCCAAACTTACTTGGTATTCTTCCAGAAAATTGTGATTGTATCCCTTTAACGTAGCCCTGTGGTGTTTCCAATGGGCTGGTTGGTGAAGAAGACACAAAATGGCAGAAACGCAACCTTCGCTCACTGTCTGAACCCTTTAGCAATTAAATGCTTGCCTGAATACTGAGTATTTGTGGGGGGTTTGACCATTTCAGACAGTATTTTCATTACGAGATGACTGTTAAATTCCATCAAGGCATCTCATCGTGGAGGATCCATTACAAACCTCTGACGTGCTCCTCACATTACTGTGGCGTCCGCCTCGTGGAAGCTCGACCACAAGTTGCTCATCTGTCAGGTCCTGTTGAAGCATCAGTTGTACTTCTGATATCTGAACTCTTTATGTTTAAATATTAAAATTCAGCACTTTGCTCAGCTTCTTGCTGTTACTCTTACCTGGGTTTTGTTGCAAGTAGACACTTGCCGTGTCTGTCTGTGTATGCATGCTTTCTGACTGTTGAAGACATAAAGGGTAAAGGCCAGTGTTTAGAGCAGTTTTACACTGCTGTTTAATGTTCAAGAGCATTTGAAGCCAAATATTTATCAAATTCCCCAAAATTTACCTGGACTGAATTAGTTTAGTGTTGCGATTTTAGGAGTGCAATTACAAAAATTTTAATAAA

Function

symbol description
ell Predicted to enable translation elongation factor activity. Acts upstream of or within vasculogenesis. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Orthologous to human ELL (elongation factor for RNA polymerase II).

NR:

description
elongation factor RNA polymerase II, partial

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03977684_03994541.mRNA True 4031 mRNA 0.44 12 3975838 3994716

Neighbor

gene id symbol gene type direction distance location
CI01000030_03954516_03959210 DOT1L coding downstream 16628 3954133 ~ 3959210 (-)
CI01000030_03943397_03953732 NA coding downstream 21805 3942708 ~ 3954033 (-)
CI01000030_03927287_03932124 NA coding downstream 43674 3927227 ~ 3932164 (-)
CI01000030_03919724_03924153 OAZ1A coding downstream 51685 3919653 ~ 3924153 (-)
CI01000030_03906284_03908070 NA coding downstream 67066 3906099 ~ 3908772 (-)
CI01000030_04012150_04013791 NA coding upstream 17424 4010930 ~ 4015095 (-)
CI01000030_04023756_04027078 NA coding upstream 28777 4023493 ~ 4027562 (-)
CI01000030_04036031_04051996 NA coding upstream 39893 4034609 ~ 4053117 (-)
CI01000030_04156234_04162950 TMEM59L coding upstream 160871 4155587 ~ 4162950 (-)
CI01000030_04178361_04181340 NA coding upstream 183607 4178323 ~ 4181340 (-)
G160351 NA non-coding downstream 5766 3969793 ~ 3970072 (-)
G160333 NA non-coding downstream 164483 3811090 ~ 3811355 (-)
G160332 NA non-coding downstream 165611 3809924 ~ 3810227 (-)
G160331 NA non-coding downstream 166084 3809424 ~ 3809754 (-)
G160263 NA non-coding downstream 317118 3657035 ~ 3658720 (-)
G160361 NA non-coding upstream 103549 4098265 ~ 4099115 (-)
G160376 NA non-coding upstream 120031 4114747 ~ 4114974 (-)
G160381 NA non-coding upstream 124212 4118928 ~ 4119136 (-)
G160446 NA non-coding upstream 226136 4220852 ~ 4221109 (-)
CI01000030_03491770_03493119 CELF5A other downstream 482738 3490119 ~ 3493741 (-)
G160213 NA other downstream 506676 3466353 ~ 3469162 (-)
G158980 NA other downstream 1443274 2499584 ~ 2536375 (-)
G158914 NA other downstream 1524120 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 1816547 2155584 ~ 2157390 (-)
G160713 NA other upstream 1424403 5419119 ~ 5423513 (-)
G160712 NA other upstream 1462244 5456960 ~ 5512074 (-)
G160949 NA other upstream 1802581 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 2138659 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 2706339 6701055 ~ 6704745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location