G170332


Basic Information

Item Value
gene id G170332
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3600004 ~ 3600216 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193512
AAGAATAGAAGTGCTGGAGCTGAAGGCTGAGCTGAGAGCAGCTGTTTGCTCCTCTCAGGGCTGTTTCAGAGATGTATCGATTGTTGTCTGCACAACTCTCTCTCTGTTGCACAACATCACTGCTCATTCATTTATCGTCTGATAAATGAATTGCCTCTTTTTGTTGATCTATTTTCTGACCTCTTCCTGTCTCAATAAATCCCTTGAACCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193512 True 213 lncRNA 0.43 1 3600004 3600216

Neighbor

gene id symbol gene type direction distance location
CI01000034_03556390_03566045 NA coding upstream 33479 3554625 ~ 3566525 (+)
CI01000034_03533995_03552021 SPOP coding upstream 47899 3533995 ~ 3552105 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L coding upstream 162171 3432846 ~ 3438839 (+)
CI01000034_03422028_03431218 SLC35B1, S35B1 coding upstream 168408 3421289 ~ 3431596 (+)
CI01000034_03407574_03419313 FAM117A, FAM117AA coding upstream 180613 3405952 ~ 3419391 (+)
CI01000034_03656686_03659087 NA coding downstream 56470 3656686 ~ 3659172 (+)
CI01000034_03670122_03684523 NA coding downstream 69727 3669943 ~ 3685216 (+)
CI01000034_03855726_03858565 NA coding downstream 255335 3855551 ~ 3859311 (+)
CI01000034_03869116_03883535 SLC4A1A coding downstream 268900 3869116 ~ 3883690 (+)
CI01000034_03887718_03890074 NA coding downstream 286949 3887165 ~ 3890409 (+)
G170330 NA non-coding upstream 1065 3598702 ~ 3598939 (+)
G170328 NA non-coding upstream 2127 3597678 ~ 3597877 (+)
G170305 NA non-coding upstream 23366 3576427 ~ 3576638 (+)
CI01000034_03273191_03285382 NA non-coding upstream 302781 3272420 ~ 3294805 (+)
G170336 NA non-coding downstream 2798 3603014 ~ 3603228 (+)
G170339 NA non-coding downstream 6485 3606701 ~ 3606923 (+)
G170342 NA non-coding downstream 9128 3609344 ~ 3689703 (+)
G170420 NA non-coding downstream 235881 3836097 ~ 3836354 (+)
G170432 NA non-coding downstream 247352 3847568 ~ 3847818 (+)
G169806 NA other upstream 1262314 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 1868827 1729413 ~ 1731179 (+)
G169340 NA other upstream 2289126 1250219 ~ 1310878 (+)
G169394 NA other upstream 2406444 1150297 ~ 1193560 (+)
CI01000034_04125435_04125780 RPRML other downstream 524884 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 594422 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G28947 NA non-coding CI01000004 null 8882396 ~ 8882600 (+)
eurasian perch (Perca fluviatilis) G24293 NA non-coding NC_053113.1 CM020910.1 46627114 ~ 46627318 (-)
tiger barb (Puntius tetrazona) G22033 NA non-coding NC_056701.1 CM032070.1 21093666 ~ 21094831 (+)