G170342


Basic Information

Item Value
gene id G170342
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3609344 ~ 3689703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193523
GTCGATTGTATAAAAATAGCAGATGAAGAGGGCTGGTTATATCCTGTCAATCAAAAGGGTGCAGAACTTGTCAGACTGCAACTCATACTGTGTGTGAAAAAAAATCTCTCTTGTGTTAAATTTTGTTAACTTGACAATAACGCATTGTTGGTTTTTTTTGGTACATCAAACATTATTAATAGTACCTCCCATCCAGTAATCACAAAGAGCTTTGTGCTTTGTTAATTCTGATAAGAAGCAAAGTCTCAGTTTTCAAATTCTGTCCATTTTATCATGAAATTCAAACAATAAATGCCGTTTTGACGCTCTTAAATGTGACATGACAGATCACTGTAGCGCCTCAGTTCATGCGGCAGCACGGAGCGTGAGTCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193523 True 375 lncRNA 0.37 2 3609344 3689703

Neighbor

gene id symbol gene type direction distance location
CI01000034_03556390_03566045 NA coding upstream 42819 3554625 ~ 3566525 (+)
CI01000034_03533995_03552021 SPOP coding upstream 57239 3533995 ~ 3552105 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L coding upstream 171511 3432846 ~ 3438839 (+)
CI01000034_03422028_03431218 SLC35B1, S35B1 coding upstream 177748 3421289 ~ 3431596 (+)
CI01000034_03407574_03419313 FAM117A, FAM117AA coding upstream 189953 3405952 ~ 3419391 (+)
CI01000034_03855726_03858565 NA coding downstream 165848 3855551 ~ 3859311 (+)
CI01000034_03869116_03883535 SLC4A1A coding downstream 179413 3869116 ~ 3883690 (+)
CI01000034_03887718_03890074 NA coding downstream 197462 3887165 ~ 3890409 (+)
CI01000034_03890532_03897571 UBTF coding downstream 200735 3890438 ~ 3899195 (+)
CI01000034_03900854_03907256 ATXN7L3 coding downstream 211151 3900854 ~ 3908450 (+)
G170339 NA non-coding upstream 2421 3606701 ~ 3606923 (+)
G170336 NA non-coding upstream 6116 3603014 ~ 3603228 (+)
G170332 NA non-coding upstream 9128 3600004 ~ 3600216 (+)
G170330 NA non-coding upstream 10405 3598702 ~ 3598939 (+)
G170328 NA non-coding upstream 11467 3597678 ~ 3597877 (+)
G170420 NA non-coding downstream 146394 3836097 ~ 3836354 (+)
G170432 NA non-coding downstream 157865 3847568 ~ 3847818 (+)
G170435 NA non-coding downstream 160864 3850567 ~ 3850890 (+)
G170437 NA non-coding downstream 166229 3855932 ~ 3856175 (+)
G169806 NA other upstream 1271654 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 1878167 1729413 ~ 1731179 (+)
G169340 NA other upstream 2298466 1250219 ~ 1310878 (+)
G169394 NA other upstream 2415784 1150297 ~ 1193560 (+)
CI01000034_04125435_04125780 RPRML other downstream 435397 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 504935 4192311 ~ 4200636 (+)

Expression


Co-expression Network