CI01000046_06349776_06359655 (SUZ12A)


Basic Information

Item Value
gene id CI01000046_06349776_06359655
gene name SUZ12A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6349245 ~ 6361268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06349776_06359655.mRNA
TCTGCCGACACATCCGGTAACGTTAGACGTTAGATTAGAGGTTTCCCGGATGTGCAGAAATTCAAATCAAGAACAAATTTATCGCCCACATCACACAGTAAAGGTTAGCATGTGTCATTGGTAATTTAATTTTAAATATTTAACCAGCAATCCAGAGTATTTCCCGGGTATATGAATGATTTTTGTATCTTGTACATGCATTAGTTGATCCTAACAGTGAAATAGATAAGACGACGTGGCACGAACTACATATTAACATATAATAATAATAATAATAATAATTATTATTATTGGCACTTTCCACAAATACACAATACGGTCTGAAACATACATTATTTTATGTTTCCTTTTCATCAAATGGAAACAGCTTAACCTTGCTTAACCTTTATCAACTTAGGAGGTTAAACTAAATATTATATGAGCTTTTTATTATTTTTTTTATGTATTTATTCTCCATTTAATTATTTAATTAATATAAACATTGATTGCTTATCTAACAATAAATAGACATCAAATATGTGTAATAAATAAATAAAGACATAAAATCTAGTGTTGTAGCTTGATTCCCTAAAAAGTAGGTATTTTCTTGGCTTTCATAAGTGTTGTTACTGCCAAATCAAGTGATTGGAGTCTCTAGCGAAATAACCATCCACAATTATAATGCTCATTATTGTTTATTATTTGTGTGATATGCTATCAGATCTCAAAAGTAGATAGCCTATACAGTATACACACACAACTAAGTTACAAGTTTAATCAGTCGAAAGTCATGAACTGGAGAAGCAGGGCGTCTCAAAACCTTTTCATAAAGCAATATGTAGTAATTGTTCCACTTATAATGAAAGGCCATAAACTAAAAAATAAAGTGCTACTCTTCTGTTAGTTTAATTTGAAATAGTGACTCTCAAACAAAACGTCAACTTAAATGCTATGTCTACAGATAAATATTTAATACAACTAGGAGCCAGAATTTACACCCTGCCCTTTTTTTTCTCGCCACAGTATCTACTCTGAAAAACGAATTTCCCGCGAAAATATAATAAGCGAAACTGAAGGCAGCGCGAGCGCACAGCTCACTCTCTACCAAACTTGATTTCAATGTCCAAACTCAAGGCTTTATCAGCTGTGTGGAATACATTCAAGAAGGAGGGCGGGTAATATTCACGGCACTTTAGACTTCAGGCTGTTTCCCATAGGGCACAAAGCTTCTGGGATTACTTGTATGTTCTTAATAAGTAAACAGCGGTGCTATTCTCTTCGCAACACAAGTGGACTGCTAATCTTTAAGCATACTTTCTGCTGCGGCTGGTTTTTGTGTTGCAGTCGGCGTTCAACTATCGCGTGAAATCCAAATTATGATCCGATAAGAGTTCGCTTTTACACGCTGGCGAGACGTCGATGTTGCACTGTTTTCTACGTGTACATTTGTGTTGTCGCGAATTCCATCCGGTCTGTAAATCAAACTGAACTGCCGGCTCGTTGATGTTAACTGTTACTTTGTTGAGGGGGCGAACCGGTCTCGGCTGCTCTCCCTTTGTTTGGACTCAGGACTCTGCTGAATCCACTGGGGTTCCGTTTCAAACATCTCATTCGACCGCGAACGCTATTTTAGGATGGCCCCACAAAAGCACGGCTCTGGTGGAAACGGTTTTTATGCCAACAGCACGAGTAAAGCTGCTAATGGAGGAGCGCACGTATCGTCCGGTGTTGTGATGCCTTCAGTCAAGCGACCCAAGATGGAGCAGATCCAAGCCGACCACGAACTCTTCCTGCAGGCGTTCGAGAAACCAACTCAAATATACAGATTTCTTCGCACAAGGAATCTCATAGCACCAATCTTCCTGCACAGATCTCTTACGTATATGGCCCACAGAAACTCAAGAACAAATTCAAAAAGAAAGTGCTTTAGCGTGAACGATCTCCTATTCAAAGTAGAGAAGTCAAAAGTGGATCAGGAATCTCACAATATGTCTTCAAACCTGCAGCTCACTTTCACTGGATTCTTCCATAAAACTGAGAAGCCATTGCAGAACTCAGAGAATGAAGAAAACTCTGTGTCTGTAGAAGTGCTGCTCGTCAAGGTCTGCCACAAGAAGAGAAAGGATGTGAGTTGCCCAGTGAAGCAAGTGCCTACAGGTAAAAAGCAGGTGCCTCTGAACCCAGATATCAGTCAGACCAAGCTGGGAGCTTTTCCCACACTGGTAGTGCCCAGCCATGAGTTTGAACCCAGTAACAGCCACATGGTGAAGTCCTACTCCCTTCTGTTCAGAGTGTCACGTCCAGGGGGGAGAGAGCTCAATGCCATGACCACCAGAGATTCCAATGTTATTGAAGAGCTGTCTAGCAGGAAGAGGAGATACTGCTCTCATCAGGATGATGGGGAAACAACATTTGTGGCACAAATGACAGTTTTTGATAAAAATAGACGCCTCCAGCTTTTGGATGGTGAGTATGAAGTCTCCATGCAAGAGATGGAGGAGAGTCCTGTAGGCAAGAAAAGGGCAACGTGGGAAACCATACTAGATGGGAAGTGGCTTCCACCCTTCGAGACCTTTTCTCAGGGACCCACACTGCAGTTCACTTTGAGATGGACCAACGACACTACTGACAGAGGAACGGCACCAGTGGCTAAACCGCTTGCCACACGCAATTCTGAATCCAGCACAGTAGACAGCAGCAAGCCTAGTAATGTAAAGCCGCCACAAGCAGTAGCTGTTAATGATTCAGTTGGTGCTGATCTACCAGTAAGAAGAGAACAAACTCATGTTGAACCTCGTCAGAAAATACGTGTTTATTATCAGTTCCTCTACAACAATAACACACGGCAGCAGACAGAGGCCAGAGATGACCTGCACTGTCCGTGGTGCACGTTGAACTGCCGTAAACTCTACAGCCTCCTCAAGCACCTCAAGCTCTCACACAGCCGCTTCATCTTCAACTATGTGCCTCATCCTAAAGGAGCCAGGATAGATGTGTCGATTAATGAATGCTATGACGGCTCTTACGTGGGCAACCCTCAGGACATCCACTGCCAGCCTGGTTTTGCCTTCAGCCGTAACGGCCCAGTAAAGAGGACTCCAGTTACGCACTTCCTTGTCTGCAGGCCCAAGCGCTCAAAGCCCAGCCTCTCTGAGTTCCTGGAGCCAGAAGATGGAGAACAGGAGCAGCCACGGACGTACATCAGCGGCCACAACCGCCTGTACTTCCACAGTGACAGCTGCGTGCCGCTTAGACCACAGGAAATGGAAGTGGACAGTGAGGATGAGAGGGACCCGGAGTGGCTCAGGGAGAAGACCGCTATGCAAATCGAGGAGTTCACAGATGTCAATGAGGGAGAGAAAGAGGTCATGAAACTGTGGAACCTGCATGTAATGAAACATGGATTCATAGCTGACAACCAAATGAATCAGGCGTGCGTGTTGTTTGTGGAGCAGCATGGCACAACCATCGTCGAGAAGAATCTGTGCCGGAACACTCTGCTCCATCTGGTCAGCATGCACGACTTCGGCTTAGTGAATACACTGACTATAGACAAGGCCATGGCTCACCTGAGAGATCTGAAACAGCAAAAAGACAGCCAGGAGCAATCCAAAAAGCAAGACCGTGCTCTTGGCGGATCCAGCGCCGATGGCGAAGTCAGCGTATCAAATTTAGTCAAGACCCAGAATCACTGAAACCTCCTCCTCTGTCAGTGGGCGTCAAACGCCCCCTGGATGTGAGATCCACCACTTTCTGCACTCACAGGGTTAAAGCTGTCTAGTTAGGAACAGGTTGTGTGGTGATTTGACTGGACGTCATCTGAGTTCAAAGCAACTCTAGATTCAAATTACTTGAAGATGCCATTAGTCTCTATGATGAACCATAAGCAAATCATTTCTGATTTGTCTCTACCCACACAATCCTGTAGCTCTAGCAAGTTGTTTAAGGTGCCTGTTTTTTAAGGACTATGAAAAGATTTTTTTAATATATTTTGAGTATTGATGGATGGAAATGGCTCCTACAAACTTGCTTTTATTGCATATTTTTCACAGGGGTTGATCAACTCATTCTGAAAACTTGAACATTTTAGTTTTGCTGGTGTATAAGTTTTTTTTTTTTTTTTTTTTTTTTTGCCACATCAATGTTTCACCACACTTGAAGACTTCAAATGACTTTTTTTTTTTTTTTTTTTCTTCTTTCTTTGGGATCTCGGACTGAAGAAAAAA

Function

symbol description
suz12a Predicted to enable chromatin DNA binding activity. Predicted to contribute to histone methyltransferase activity. Predicted to act upstream of or within chromatin organization. Predicted to be part of ESC/E(Z) complex. Predicted to be active in nucleus. Is expressed in gonad; midbrain hindbrain boundary; pharyngeal arch; and visual system. Orthologous to human SUZ12 (SUZ12 polycomb repressive complex 2 subunit).

NR:

description
Suppressor of zeste 12 homolog (Drosophila) a

GO:

id name namespace
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K11463 SUZ12; polycomb protein SUZ12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06349776_06359655.mRNA True 4205 mRNA 0.43 16 6349245 6361268

Neighbor

gene id symbol gene type direction distance location
CI01000046_06312028_06323678 NA coding downstream 25395 6311530 ~ 6323850 (-)
CI01000046_06223230_06251304 CASKIN1 coding downstream 97941 6222779 ~ 6251304 (-)
CI01000046_06192265_06195160 GNG13B, GNG13 coding downstream 153619 6190292 ~ 6195626 (-)
CI01000046_06171463_06172702 DCTN5.S, DCTN5 coding downstream 174613 6171006 ~ 6174632 (-)
CI01000046_06165650_06167393 NA coding downstream 181537 6165638 ~ 6167708 (-)
CI01000046_06399300_06413564 RAB11FIP4A, RAB11FIP4 coding upstream 37399 6398667 ~ 6413564 (-)
CI01000046_06456550_06456910 NA coding upstream 93660 6454928 ~ 6457126 (-)
CI01000046_06460451_06464009 COIL coding upstream 99183 6460451 ~ 6464335 (-)
CI01000046_06471554_06479199 ENGASE coding upstream 109817 6471085 ~ 6479491 (-)
CI01000046_06619452_06652257 GNA13, GNA13.S coding upstream 257898 6619166 ~ 6652257 (-)
G199073 NA non-coding downstream 217476 6131304 ~ 6131769 (-)
G199072 NA non-coding downstream 218225 6130073 ~ 6131020 (-)
G199071 NA non-coding downstream 219567 6129419 ~ 6129678 (-)
G199027 NA non-coding upstream 14530 6375798 ~ 6378195 (-)
G199097 NA non-coding upstream 18306 6379574 ~ 6380004 (-)
G199106 NA non-coding upstream 91107 6452375 ~ 6452777 (-)
G199119 NA non-coding upstream 193279 6554547 ~ 6554754 (-)
G199121 NA non-coding upstream 195431 6556699 ~ 6557033 (-)
G199054 NA other downstream 251571 6097359 ~ 6097674 (-)
G198265 NA other downstream 2549144 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 3481451 2866070 ~ 2867794 (-)
G196463 NA other downstream 4180601 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 5568952 774434 ~ 780293 (-)
G199014 NA other upstream 2910 6364178 ~ 6375406 (-)
G199130 NA other upstream 216712 6577980 ~ 6594210 (-)
G199181 NA other upstream 465417 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013407 NA coding CM030125.1 CM030125.1 30439674 ~ 30452954 (+)