CI01000046_06312028_06323678


Basic Information

Item Value
gene id CI01000046_06312028_06323678
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6311530 ~ 6323850 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06312028_06323678.mRNA
AGCTGCACCAGCTCTATAGTATCCGAGCATCCTTCCGCCAGTGTGCATCCTCATCCTCATCATCATCATCGCGCCCTGCAGCTCCATCGCAAGAGGGAGGATCCGCAGAGGAGATCTCCGGGCAACACCACACACACATTCAGAGGATGCTTTGGATGTAAAATAAATAACGATGGGGAAAGATCAGGAATTACTTCAAGCGGTGAAGACTGAGGACCTGATGACGGTGCAGAAGCTCCTGCAGAGGCCCAAACCTGGGAAAGCAATGTGGCAGCAGCACACTCCTGCTCAGCTAAACACTGCCCCCTGTAATGATGGGGTGAATGAGCACGAGTTCGAAAAGTCTATAAAACCTTGTGCTATTGTGAACATCAATGAGAGGTGTGAAGAGAAACAGAGGATGCTGTTATGTAACCTCACACAATGGAGTCGTGGGTACAGTGGAGATCACACTTTCCCAGAGGGGGCGAGTGGAGCCAGGCATTTGTCACAGCCACGGACCCAGTCTGTTGAGGAAATGGACGTTTTCTTCCCCTTGTGACATTAATCTTCCTCCCAGTGTAGCTCCAAGTTATTTCAATCCAATCTAGTCTGTGAATTAGTTCTCTCCACTCAGGCCCACTTTTAATAAA
>TU225875
ACTAAATAAAAAATAACATGCAATTTTCATGATCCTTCTAACATTTTTTTGCATATTCTGCAAGGGGCATGTAAACTTTTGAGCTCAACTGTATCTTGTAAAATATTGGCAATATGGTGAAGTGAGTTCAGACAACATCATAAAACATCTCTCAAAAAGTGAAAACGAAGCTGCTGGCCGAGCTCAAATTTGCACTCACTGCCAGTCAATATTAAGACAGTGGCTTGGAGCCCTGTAGCTAATCCAAGTAATCATTACTTCCACTGCTTAGTGTGATGATTGAATTACAGTGCAGATGGCTCAGTCGCAGAAGAGAGAGAAAGAAAGGAGGAAAGAGTGCTGGGAGGGAAAGCAAGAGAAGCAGAACTAAGACAGCGAAAAGACATCAGTTACTCTGACACAACGAAACTTTTACATCTCACTGGATGGTTGGCCACCTTCGGGGGTTTTCAGTGGTGAGCGTGACTCTAGTGCAGATGTCTCACACAGAAGTGTTCGTTTCTCAAAGGGGGTGAAGCTGCTTTTCTGTTCATTTATCTGCAATACTGAGGTCTGAATTCTGAGGTGTTAGTGTGTATATGAGCCCAGAGGGAGAGTGAATTGGAAAAAGTGTTTCCAGACGATTTCTGCACAGCATTTTTCCATATATTCAGCACATTCTCCACCTTTTCCACAAGCATTCACTGCAGAACTCTACAGAAAGAACATCTGGAATATATAGTATATCTCATCGCAGTAAATTGCTGATTAGTTTCATTAGCATGAAGCGAGTGGAACACTGCAGAGCGTGACTCAACATACTGATGAAGACATGACGGGATGGGTTATCTATTCTCCACCTCTACAACCTGTTCACATATCCCAGCAGCAATTAGAGCTGAGCTATTTTAGCAGTCGAAACATATGGGGTCCCTAAGGGAAAAAAACTCGTTGTAGGCCTCTCTCACTCTGCTTTCCTCTGCCGGCTTGATTCTGAAGGTTTGCAGTGAAATAAATCTGGTGAGAACATGAATGTAGGGGTGAAGTGCTAGATGGATGACTGACAGCTCACAGAAGTACTGATACTGTTGAGATTGGTAGGATGTGGTTGGAGGATTTTTTTTCACTGCATATTCTTAAGCTCAGAGCTGAACGGGTTAGTCAGGTGGTTGGAAATGGTCTGCAGCGGGTCTCCATGGACACATCCAACATCTGCGTGACCATCCAGGACAAGTAAAAATGAAATGTAGGTGCTTGACATGACATGCTTTATTAAATGTCCAAGTGTGGATATCCTAAAATATCTATCAAGATTGTTAATCAAATGTATTTAAACAGAGTTCAGTAAGTACTTACAAATGTCTCTAAAGCGTTGAACATCAAAGTACATATTTGTAGCCATCTTCCAGGATGTTTTCTCTTTTTACACTAAAATGAAATCAAATAATTCAACTAAATCCTAAGTCTTAAAAAGTTTAAAACAATAGAGTGAAATACAGAAGTAGTGGGGCAACTGGTTAAGTGTGAAGGTTTTGTATTTATTTGAGAACATTTTTTAAAATTAATTTTTCCTCTGTATAGTATAGTGTTGTGGAGATCATCAGAAACTAAACCATTTGGCATCATAATTTAAAATAACGGCAATGACACATTATAAAAATGTCCAAATTTGCTTAAATTCAGCCAATATTATGAAGCCCATGTATAATGCTGAATATTAAGCTGTTAAGATATAAAAGACATTTGTCTAAGAAATGGGTTATTTATTTTGATACTATACTGAGCTGTGAAATAGACATTTATGTAGTTGCCTTTGAGTTGAAGCAGCATTTGATCAACAACAATAACAAAATAACAACCAAAACAAGAATAACATCACTGAAGGACACTAAAATATTAAGAGCAGTGGATTTATGCTAGATGAGTTTCTTATTCTATTATTATCTTATGTAAATAAAAATCATTTGGTGTGGTGATATTCAAAATATGCTTTTGAAAGTAAAACAGTTAGACTAATACAACTGGAAATGTGTAACGTTTCAAGGCTCAATTTCTTAACATTAGTTAAAATATTAGGTATCAAACTAACAATGAACATTTTTTTTACTGCATTTATTAATATAGGTTAATGTTAACTTATACTGTTATTATTCATTTTTAATTAATGTTCATTCAAAATACATGTTAATTGATAATACTTGAAATCTTAATGCATTGTAGAAATTAAACAAGATTAATTAAATGCTTTGAAAGTATTGTTCATTGTTATTTTGTGCATTAACTATTGTTAACTAATGTTAATATTATAGAATACATACAGTGCTCAGTGTAAACGAGTACACCCCCTTTGAAAAGTAACATTTTAAACAATATCTTAATGAACACAAAAACAATTTCCAAAATGCTGACAAGACTGTTTAACTTATAACATGAAAGTAAGGTTAATAATATAACTTAGAGAACAAAATATTCAGTTTTACTCAAATTAGGGTGATGCAAAAATGAGTACACCCTACAACAAAAACTACTACATCTAGTACTTTGTATGGCTTCCATGATTTTTAATGACAGCTCCAAGTCTTGTAGGCATGGAAAGGTGTTCGATTGGGTTCAGATCAGGAGCCACTGAATCACTTTCACCCTGTTCTTCTTCAAAAATCCAATAGTGGCCTTAGATGTGTGTTTAGGATCATTGTCATGTTGGAAAAGTGCATGACGCCCAAGGGCACGGAGTGATGGTAGCATCTTCTCTTTCAGTTTAGAGCAGTACATCTGTGAATTCATGATGCCATCAATGAAATGCAGCTCCCCGACACCAGCAGCACTCATGCAGCCCCACATAAGGACACTGCCACCACCATGTTTCACTGTAGGCACCATGCATTTTTCTTTGTATTCCTCACCTTTGCGACGCCATACAGTTTTGAAGCCATCAGTTCCAAAAACATTTATCTTGGTCTCATCACTCCAGAGTATAGAGTCCCAGTAGTCTTCATCTTTGTCAGCATGGGCCCTGGCAAACTCTAGGTGGGCTTTTTTGTGCCTGGGCTTCAGAAGAGGCTTCTTTCGTGGACGGCACCCATGCATGCCATTCCTCTGCAGTGTACGCCGTATTGTGTCACGGGAAATAGTCACCCCAGTTTGGCTTTCTACTTCTTTAGATAACTGCAGTGAACTTGCATGCCGATTTTCTTCAACCCTTCTCATCAGAAGACGCTCCTGTCGAGGTGTTAACTTCCGTGGACGACCTGGACGTCTCTGTAAGATGGTTGCAGTTCCACCTTTTTTAAATTTTTGTACCACTTTTGCTACAGTATTCTGACTGATAAGTAAAGCTTTGCTGATCTTCTTGTAGCCTTCACCTTTCTGGTGTAAAGAAATTATTTTCTTTCTCAGGTCTTGTGACATTTCTCTTCCATGTGGTGCCATTGCTGACAGCGTGAAATGGGAAGGGGTTTTAACACCCTTTTATTGTCAACTGTCTGCTGGACACCTGTGTAATGAATAATTAGACTCACCTGTGGTTGAATTCTTGTTAAATTAGATATTTGTAGTCTAAAATTTAGCTTTGCTCCAAAGACTTGGGGTGTACTCATTTTTGCATCACCCTAATTTGAGTAAAACTGAAAATTTTGTTCTCTAAGTTATATTATTAACCTTACTTTCATGTTATAAGTTAAACAGATGTTGTATTAAACTTAGTCTTATCAACATTTTGGAAATTGTTTTTGTGTTCATTGAGATACTGTTTAAAATGTTACTTTTCAAAGGGGGTGTACTCATTTACGCTGAGCACTGTATAGTATATAATTTTTATTGTAAAGTACATGACCATTTCATATTTTTGCAAAAGCAGAGATAATATACAAAACAAATGAGGTATCGGTTATCAGTAGTATGTGTAATACAACAATAGCCGACTTAGAAAATGTCAACCACCCATTGTCCTGTTTTTGCCTGGGTCCCTGGAGCATTTACAACACATGACCTTAATCTGGGGACCTGACCCACATAATCCTGAAGGTAGAGGGGGCGGCAGCATTCTTAAGCACATTAACTGTTGCTGATTCCTCCCAGCGTGCTCCTGAACTACTCTGGCATGTATAAATGTGCTTATCACTATCACTTTGATCAGACTCCACAGTATAGTACACATTAAATCTGTTTATGTTTCCTTATAATAGCCTTAAGTGCATAATTGCCATTTTGATGAAAAACCTGTAGTTTTCATACATGAAAATCAGCAAATTGTCAGTCTGAGAGGTTGCAAAATGCTTTCGTACAGTTCGAAAAGTCTATAAAACCTTGTGCTATTGTGAACATCAATGAGAGGTGTGAAGAGAAACAGAGGATGCTGTTATGTAACCTCACACAATGGAGTCGTGGGTACAGTGGAGGTGGGTGGACAGAGAGAGAGGCTGGAAAAAGTGGACTGTGTGTTTTGTCATTTCTTATACGGTGCAGTGCTAAAGAACATTGCCTGAAAACTAACAATATATCTCAATGTTGAAAAATAAAATAAATACAACTTTTAATGTACTGCAACACACATTCATATTGAAATGGTGTATTTTTGTAATCTGTATCAATACTAGATCTGTATTCTATACTATTTCATCAAAGGTTACTCTTTATATAAAGAGTAATTCAATCAATTTTTTAATATTATAAAGTAAGTACCTCCTTACTTTTTTTCTTACATATATTCCATGCCATCACCAGAGATTTTCACATTTTTGCTGAACCTTTGGAAAGTGCACATGGACACACACATACATTATTATTAGTATGACTTTCTAACGACAGCCACTGGAGAAGCCATTAATCATAATCCTCACTGCAAATAAACAGATTTAATGAGTGACTCACTAAGAGTGACTCAGTAAACCCAATGTTACTGAAAATAAACTTGAGAGATATTGAGAATCTTCACATCCAGATGTTGGACTGGGGTGAGCTGACCGACAGGCAGCTGTGTGTTGAATTGTGGCTGTTGGCTGAGAAATAGTGCAGATGTTTCTGTCTAGAGCCCATATTTGCTGGGCTACAGCAGACGAACAGATCACATATCCAGCAAACCTGAATCCATCTGATCCTTAAAGACTCAGGCATGATTAAAGTTCCCGTCTGGACTGTGAATGAGGAGATCTGGGTGGATATGTGCTCAAAGGAGTCTAGCAGCCATTACAATTGGGGAGGAAATTTGCACAATATGGTATCATATCATTTATCGAATTATATATACAGTAGATATAGATGCATGTTTTATTTAGCAAGGATGCATAAAACAGATCAAAATTAAAGACTTTAACATTGTTCTATTTCAAATAAATGCTGTTCTGTCATGACAACTCTCGGGATATTGGTATGATAATTGATAATAGATATGACAATGTTAATGTATTTAGTCTTGGTGGAATAGATCTGCTACACTGCTGCTGCAGAGCAAGTACAGAGCCTTGCTACTGCCAATACATTCACAGACATTGCTGTGAACATGTAAGACATATGTAACATACATGAATTAACCCCCCTAGCAGATCTATACAGATAGAGCTGGGGAAGGAGGAGGGTTCTGAAAGCACACTGCAGACTGCTAACAGCAAACATGCCAAATATTTGAATGTTTGAGCAGCGAGCTCATTGGCTGCTGATGCAACAGCAACCAATCAGCTGTGCTGTGTAGATAATGATGAGATTGCTACCAAATTAGTTAAAGACCCATCAGCCTGCATCGTCAGAGTTTCAAGACAGAACTAGATAATCGTTTAAAACTCAATGAGTCCGTATAAAGCATCCCAGTTTCCACAAAATATTAAGCAGCACAACTGATTTCAACATCGATAACAAAAAAGAAATGTTTCTTTGAGCATCAAATCATCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGCAGTAATGATGCTGAAATTTCAGCTTTGCATCACAGAAATAAATTACATTTTAAAATATTTAAATAGAAAATATTTATTTTAAACAGTAATATTTCACAATTTTACTGTTTTATCAAAGAAATGCAGCCTTGGTGAGCATAAGAGACTTCTTTCAAAAACATTAAAAAAACCTTCGCAGCATAATGTTGTGATGCCTACATTCGAAAATTTAAAAAAAGGGGGAAAGATGGGGTTTTGCCATTTTGCATTGTAGGAGAAGCACCAAAATAAGTTATGCTGCAGGTTCTGAACAGGTGGGCTGTTCAGGGAACATAATATTCTTCTGACAGAACTTCAGACTGTCAAAATAGTCTCCCACACATTCTCCAAGAGTGTCGTCTCTGCTTTCCTAGCTCCCAACTGTAGGATTGTTTCATTTGTCTGATTTTTCTCTTAAATAAACCTCTTGCTGCTCATCAGATCACACTTTCCCAGAGGGGGCGAGTGGAGCCAGGCATTTGTCACAGCCACGGACCCAGTCTGTTGAGGAAATGGACGTTTTCTTCCCCTTGTGACATTAATCTTCCTCCCAGTGTAGCTCCAAGTTATTTCAATCCAATCTAGTCTGTGAATTAGTTCTCTCCACTCAGGCCCACTTTTAATAAATCATAACTCGCACTCTGTGTTTAATCAGTCACGCGCATGGCAAAGATTTCACCTTTTTGAACTGTTTTTTTGCCTGTTCTCTTTTAATGATAATGAATTTTCTAATGCATTCCTTATGATGTCATGTATTACATCCCTATCAAGCAGAGGGGATAAAAACACATCTTCCCAAGCTTTTCCATTTGATGAGCTTTTCTATTTTTTTTTCATTTGACCTTTTTTGTCTTATCTCACCATGCACAGACCATCGAAAAAGCTTGCCTGTAATTATGGATCTAACTGAACTTTATGATAAAAAGTTTTGGAATGCCCTTTAAAGGATTAGTTCGCCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTCGTTCATCTTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06312028_06323678.mRNA False 632 mRNA 0.49 4 6311937 6323850
TU225875 True 6957 lncRNA 0.37 2 6311530 6319812

Neighbor

gene id symbol gene type direction distance location
CI01000046_06223230_06251304 CASKIN1 coding downstream 60633 6222779 ~ 6251304 (-)
CI01000046_06192265_06195160 GNG13B, GNG13 coding downstream 116311 6190292 ~ 6195626 (-)
CI01000046_06171463_06172702 DCTN5.S, DCTN5 coding downstream 137305 6171006 ~ 6174632 (-)
CI01000046_06165650_06167393 NA coding downstream 144229 6165638 ~ 6167708 (-)
CI01000046_06095369_06102443 NA coding downstream 209227 6095023 ~ 6102710 (-)
CI01000046_06349776_06359655 SUZ12A coding upstream 25395 6349245 ~ 6361268 (-)
CI01000046_06399300_06413564 RAB11FIP4A, RAB11FIP4 coding upstream 74817 6398667 ~ 6413564 (-)
CI01000046_06456550_06456910 NA coding upstream 131078 6454928 ~ 6457126 (-)
CI01000046_06460451_06464009 COIL coding upstream 136601 6460451 ~ 6464335 (-)
CI01000046_06471554_06479199 ENGASE coding upstream 147235 6471085 ~ 6479491 (-)
G199073 NA non-coding downstream 180168 6131304 ~ 6131769 (-)
G199072 NA non-coding downstream 180917 6130073 ~ 6131020 (-)
G199071 NA non-coding downstream 182259 6129419 ~ 6129678 (-)
G199070 NA non-coding downstream 183388 6128115 ~ 6128549 (-)
G199027 NA non-coding upstream 51948 6375798 ~ 6378195 (-)
G199097 NA non-coding upstream 55724 6379574 ~ 6380004 (-)
G199106 NA non-coding upstream 128525 6452375 ~ 6452777 (-)
G199119 NA non-coding upstream 230697 6554547 ~ 6554754 (-)
G199121 NA non-coding upstream 232849 6556699 ~ 6557033 (-)
G199054 NA other downstream 214263 6097359 ~ 6097674 (-)
G198265 NA other downstream 2511836 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 3444143 2866070 ~ 2867794 (-)
G196463 NA other downstream 4143293 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 5531644 774434 ~ 780293 (-)
G199014 NA other upstream 40328 6364178 ~ 6375406 (-)
G199130 NA other upstream 254130 6577980 ~ 6594210 (-)
G199181 NA other upstream 502835 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G256987 NA non-coding NW_019171602.1 APWO02001200.1 189888 ~ 191542 (+)