CI01000046_06460451_06464009 (COIL)


Basic Information

Item Value
gene id CI01000046_06460451_06464009
gene name COIL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6460451 ~ 6464335 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06460451_06464009.mRNA
ACAGAAAACAGCAGCACGACCAGCATGCCAATCCACGACCGTGCCATTGTTATTGATCTCAGTCAAGCTCTCTGAAACAGTGGCACAGAGTGGCTGACTATGTTCGGACCCACCGGCTATAAGTACTCAAACCCAAACCTCTCTGAGCAATGTGATGTAAGGAACAGTATCATATGACTTCAGTCAGCTGACGAACAGGGAAATAACCTGCCGCTATTCTCTTCCACACCAGTGGAGGGCAGCAGAGTGTGTGACAGCGTGACCGAAGCCCTCGTTTAAAACAGTGAGCGCTTCCATCGTCCTCATTCTGACAATACTGCTCAGGCATGGCCACCTCCAGTCTCAATTCTGTCAGGGTTAGATTGTACTTTGATTATCCTCCTCCCGCGACACCTGAGTGTCGGATGTGTTGGTTGCTGGTGGACTTGAACAAATGTCGAGTTATCACAGATCTTTCCAGCATTATAAAGGAAAAGTTTGGCTACAGCCGTAAGACTATTTTAGACTTGTTTATTGAGGATTGCTACCTGCCTGCCACAGAAAATATTTATATAGTACGCGATAATGACAGTATAAGGGTAAAGGTATCCAGTCCTGTTTATGTTAATGGAGCTGAGGCTTACCAGAACTCTGAAGCACAAATCTCAAAGACCAAGAAAAGAGTGAGAGAGGATGAGACGCAGAACTGTGAAGGTCTAACCACCAAATCTGCCACCCCTCAAAAGAACATTGCAAACCCTTCCCCTACGAAAAACAACAGAAAAAGCACTTCTGCTGTCAACACCAGTGACAAAACATCACGTACGAAGAATCATGAACCAACGTCAGATAGCAGTGAGGATGAATCCCACAAAAAGGCCCCTCCACCAAAACCTAAACCCAAGCAGAATGGTGCAACCAAAAAGCCCACTGTGGCTGCGCGGAAAGAAAGCACATCATCAGATTCATCATCTTCGGGTGACGTCAATAAGTCCAAAAGCAGCAACCCTGTACAGCCACTTCCTGTTACACCTAAACCATCTAGCGCAAACTCAAAACTTCCACTACAGACACCTCAACGTAGAGAGAGCTCCACAGATTCCTCTTCCTCCTCCTCATCGTCATCACCCAGCCGAGTCAAATCTGTAGCCAAGAAATCACAAGCAGCAAGTCAACCTTCCTCAGCCACTCAAAGTGCAGTTCAGTCGGTCTCGTCTTCTGTGTCCAAAAAGCCCCAGGATAAGGCAGAGAGCTCGGACTCTGATGACAGTGAAATAGAGCTTGTGATTAAAAAACCAAACCTACACGGAATGGGATTGAAAATTGCCGGTTTGAGCTCCGGTGTTGGTGAGGCAGCAGGCAGGGACAGAGGAAACACAAGAGGTCAGGAGAGAGGCAGAGGTCGAGGTGCAAATCGAGGCGGTGGGAGAGGAGGTTTTGGTCGGGCCAAGGGAACACCATGGAAACAAGACTTACATTTCAGCTATGAAAATGGCGAGCGGCAGAAACAGAATGATTCTCTGACTAATGAAAGTTTTATTCTGCAGAATCCACCTGAACCAGCTCCCAAACGAGACTACACAGCTTTACCCTTGCTGGCAGCTCCTCCTGCAGTGGGTCAAAAAATTGCTTTTAAGCTTTTAGAGCTGACTGAAAACTACACACCAGAAGTGTCTGATTATAAAGAAGGGAAGATTATTGCATTCAATCCTCAAACAAAAGTGCTGGAGCTTGAACTGCTCTCTCAACCGCAAGTTCCAGCTGAACCTGGCAAGTTTGACCTTGTATATCAGAACCCTGATGGATCAGAGATAGTAGAGTATGCTGTCACACACGGATCACAG

Function

symbol description
coil Predicted to enable U1 snRNA binding activity and U2 snRNA binding activity. Acts upstream of or within Cajal body organization and spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be active in Cajal body. Is expressed widely. Orthologous to human COIL (coilin).

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process

KEGG:

id description
K13150 COIL, CLN80; coilin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06460451_06464009.mRNA True 1823 mRNA 0.47 7 6460451 6464335

Neighbor

gene id symbol gene type direction distance location
CI01000046_06456550_06456910 NA coding downstream 3325 6454928 ~ 6457126 (-)
CI01000046_06399300_06413564 RAB11FIP4A, RAB11FIP4 coding downstream 46887 6398667 ~ 6413564 (-)
CI01000046_06349776_06359655 SUZ12A coding downstream 99183 6349245 ~ 6361268 (-)
CI01000046_06312028_06323678 NA coding downstream 136601 6311530 ~ 6323850 (-)
CI01000046_06223230_06251304 CASKIN1 coding downstream 209147 6222779 ~ 6251304 (-)
CI01000046_06471554_06479199 ENGASE coding upstream 6750 6471085 ~ 6479491 (-)
CI01000046_06619452_06652257 GNA13, GNA13.S coding upstream 154831 6619166 ~ 6652257 (-)
CI01000046_06664434_06673031 COG1 coding upstream 199225 6663560 ~ 6673535 (-)
CI01000046_06676701_06682877 ROGDI coding upstream 211644 6675979 ~ 6684823 (-)
CI01000046_06685686_06699338 GLYR1 coding upstream 220995 6685330 ~ 6699338 (-)
G199106 NA non-coding downstream 7674 6452375 ~ 6452777 (-)
G199097 NA non-coding downstream 80447 6379574 ~ 6380004 (-)
G199027 NA non-coding downstream 82256 6375798 ~ 6378195 (-)
CI01000046_06192265_06195160 GNG13B, GNG13 non-coding downstream 262728 6190292 ~ 6195626 (-)
G199119 NA non-coding upstream 90212 6554547 ~ 6554754 (-)
G199121 NA non-coding upstream 92364 6556699 ~ 6557033 (-)
G199126 NA non-coding upstream 105225 6569560 ~ 6569967 (-)
G199128 NA non-coding upstream 107381 6571716 ~ 6572021 (-)
G199130 NA non-coding upstream 123842 6577980 ~ 6594210 (-)
G199014 NA other downstream 85045 6364178 ~ 6375406 (-)
G199054 NA other downstream 362777 6097359 ~ 6097674 (-)
G198265 NA other downstream 2660350 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 3592657 2866070 ~ 2867794 (-)
G196463 NA other downstream 4291807 2168266 ~ 2168644 (-)
G199181 NA other upstream 362350 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026593 coil coding NC_007114.7 CM002887.2 36119782 ~ 36127234 (-)